Input parameters:

  Query = CmaCh12G011040 (Len=1145)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G011040, Len=1145):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRSCGHKFDEAVGNPPYPVAPRLSFEQLPEDWQCPTCGAALRRVSSYLLEYGLLLKMVDAKSSIAKDVTELIGKTPLVY 80  
WD40-rpts                                                                                      

Query       81 LNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAEENGLITPGKSALIEPTSGNTGIGLAFIAAAKGYKLIITMPAS 160 
WD40-rpts                                                                                      

Query      161 MSLERRIILRAFGAELILTDPARGMKGAVQKAEEIKAKTPDSYILQQFENPANPKIHYETTGPEIWSGSGGKVDALVSGI 240 
WD40-rpts                                                                                      

Query      241 GTGGTITGAGRYLKEQNPSIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDVPLLDEVVQVGISSGAAAAAAIKV 320 
WD40-rpts                                                                                      

Query      321 AKRPENAGKLIVVSVPFLSHVVYFLWHYNTALACDLPELWGTIPLNRVVRVCETRDREYGFRAMRVYAIGTRRTIHKIVE 400 
WD40-rpts                                                                                      

Query      401 YSFKFNPEVSSAMHRVGSAGNTSNSSRPRKEKRLTYVLSDANDSKHSAGINCLAVPKSSIDGYNYLFTGSRDGTLKRWSL 480 
WD40-rpts                                                                          (___________

Query      481 DEDAASCSATFESHVDWVNDAVLVGNNRLISCSSDGTVKTWNCLTDGGCTKTLRQHSDYVTCLAAAEKNSNVVASGGLGG 560 
WD40-rpts      _____________WD 1________________________)                                      

Query      561 EVFIWDLEAAYAPSSKSSDATGDECSNGIIASGNSLPVTSLHAINSSNNISTHPNHSHGYVPIAAKGHKESVYALAMNDS 640 
WD40-rpts                                                                (_________________WD 2

Query      641 GTLLVSGGTEKVVRVWDPRTGSKTMKLRGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALA 720 
WD40-rpts      ________________)   (_________________WD 3________________)(__________________WD

Query      721 STPSFSYVYSGGRDLSLYVTDLSTRESLLLCTGEYPIQQLAIHDENIWVATTDSSVHRWPAEGRNPHKAFERGGSFVAGN 800 
WD40-rpts       4__________________)                                                           

Query      801 LSFSRARASLEGSTPVPVYKEPTFTISGAPAIVQHEILNNRRHILTKDAAGSVKLWEVTRGIVIEDYGKVSYEEKKEELF 880 
WD40-rpts                                                                                      

Query      881 EMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNITGKPEDDKVNLARENLKGLMAHWLAKRKQRFGSQASANGEV 960 
WD40-rpts                                                                                      

Query      961 ISSKDISARSLSHSRLEAVDGNAENDSMVYSPFEFSTVSPPSIITEGSQGGPWRKNITEFDGTEDEKDFPWWCLDCVLNN 1040
WD40-rpts                                                                                      

Query     1041 RLPPRENTNGFEEQWVVNYVVEKMVLDKPLDNVNPDISFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMS 1120
WD40-rpts                                                                                      

Query     1121 LATVRNYIWKKPEDLVLNYRMLQGR 1145
WD40-rpts                               

4 WD40-repeats found in QUERY=CmaCh12G011040 (Len=1145):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   469-522      5.11  325.90  0.00252       32.5%     31.80
  WD 2:  Seg 19   619-657      5.61  346.52  0.00133       30.0%     24.66
  WD 3:  Seg 22   661-699      8.30  457.57  4.2e-05       32.5%     36.53
  WD 4:  Seg 25   700-741      6.11  367.10  0.00070       27.5%     39.53

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  469-522    GSRDGTLKRWSLDE--DAASCSATFESHVDWVNDAVLVGNN-RLISCSSDGTVKTWN
   WD 2  619-657    -G-----------Y--VP----IAAKGHKESVYALAMNDSGTLLVSGGTEKVVRVWD
   WD 3  661-699    -G-----------S--KT----MKLRGHTDNIRALLLDSTGRFCLSGSSDSMIRLWD
   WD 4  700-741    LG-----------QQRCV----HSYAVHTDSVWALASTPSFSYVYSGGRDLSLYVTD

   WD40 Template    TG-----------E--CL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD