Input parameters:

  Query = FBpp0307729 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0307729, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLTEQNPYGNGLLYAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYFPEGGLSHVEMLFRCNYLALVGGGIRPLYPPN 80  
WD40-rpts      (________________WD 1_______________)   (____________________WD 2_______________

Query       81 KVIVWDDLKKSPAISLDFNQPVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQLHVFETSSNPNGLCVLCPHSNKSLLAFPG 160 
WD40-rpts      _____)(________________WD 3________________)(____________________WD 4___________

Query      161 RRTGHVQIVDLANTERAPLEVIAHEAGISCIALNLQGTRLATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNH 240 
WD40-rpts      _________)(___________________WD 5___________________)   (__________________WD 6

Query      241 QSTMVVVASDHGTIHVFNLEDNKPRESSLPIIPKYFSSQWSFVKFSIPQGPRCVCAFGADPNSVVAICADGHYYKFLFNN 320 
WD40-rpts      _________________)(___________________________WD 7__________________________)   

Query      321 KGECSRDICTQFLELQDDET 340 
WD40-rpts                          

7 WD40-repeats found in QUERY=FBpp0307729 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.80  354.42  0.00104       15.0%     43.28
  WD 2:  Seg  4    41-86       5.11  325.82  0.00253       15.0%     44.92
  WD 3:  Seg  8    87-124      4.07  282.91  0.00955       22.5%     37.72
  WD 4:  Seg 12   125-170      4.93  318.46  0.00318       17.5%     45.06
  WD 5:  Seg 16   171-214      7.64  430.07  9.9e-05       25.0%     58.07
  WD 6:  Seg 20   218-258      7.44  422.00  0.00013       22.5%     57.05
  WD 7:  Seg 24   259-317      5.16  327.81  0.00238       15.0%     57.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     MN------------------------LTEQ-----N-PYG--NGLLYAAFNQDQGCFA-------CAT-DTG-FRVYN
   WD 2   41-86     -L---K-------------------EKERQ-----Y-FPE--GGLSHVEMLFRCNYLALVGGGIRPLYPPNK-VIVWD
   WD 3   87-124    DL---K-------------------KSPAI-----SLDFN--QPVRAVRLRRDRIVVV-------L---EGV-IKVFT
   WD 4  125-170    FT---Q-------------------QPQQLHVFETS-SNP--NGLCVLCPHSNKSLLA------FPGRRTGH-VQIVD
   WD 5  171-214    LANTER-------------------APLEV-----I-AHE--AGISCIALNLQGTRLA-------TAGEKGTLIRIFD
   WD 6  218-258    -G---K-------------------KVSEL-----R-RGSNHANIFCINFNHQSTMVV-------VASDHGT-IHVFN
   WD 7  259-317    LE---DNKPRESSLPIIPKYFSSQWSFVKF-----S-IPQ--GPRCVCAFGADPNSVV-------AICADGH-YYKFL

   WD40 Template    TG---E-------------------CLRTL-----S-GHT--SGVTSVSFSPDGKRLV-------SGSEDGT-IKVWD