Input parameters:

  Query = seq-IWQER1351494876 (Len=527)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (seq-IWQER1351494876, Len=527):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDRDALNISAPDVIRLILQYLKENNLIRSFYVLQEESNIKLNAISNVDKLIRDINKGDWKNVLFNITTIDLSDETLMCF 80  
WD40-rpts                                                                                      

Query       81 YEQLICELVEYNEKELAEKIMDECIIFKRMEKKYNDKYNKLIEIMNSKHINKNILYDGLTKDEKRNHLCNMITNEITTCA 160 
WD40-rpts                                                                                      

Query      161 PSRLLALIGMALKWQAHHNIIKNKKDGYFDIFRNIEKDIINTIDVYPEKILKSIKFGKESNVECCISSYNNDYLITGSSD 240 
WD40-rpts                  (_____________WD 1_____________)(___________________WD 2____________

Query      241 GFIEIWNWITGELNLDLEYQKQNNLMIHDNPIVTLCISKDDEILLSGDSKGLIKIWRIKTGICLKIINAHNDSLISIQFN 320 
WD40-rpts      ______)            (________________WD 3________________)   (_________________WD

Query      321 NDQTQILTSSYDKSVKIFGLKSLKCLKEFRKHEDSVVHSAIYTLDNSKIICATDQGKIFIYNQKTLECITSFYVYFNKSE 400 
WD40-rpts       4________________)   (_________________WD 5_________________)   (______________

Query      401 NLIFPSLNNIILINKNLEDHILVCSKSPYCYIMNMKGKIIKTYTNTIDKDKDKDYDSPYFLYACISPNFKYVYCIAEDYN 480 
WD40-rpts      ___WD 6_________________)                     (_________________WD 7____________

Query      481 LYCFDYNTSKLLNQMKIHDKDILGIIHHNNQNIMASWSLDGKLNIIQ 527 
WD40-rpts      ____)   (_________________WD 8________________)

8 WD40-repeats found in QUERY=seq-IWQER1351494876 (Len=527):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   173-204      2.93  235.61  0.04080       15.0%     37.16
  WD 2:  Seg  4   205-247      8.41  462.04  3.7e-05       27.5%     54.91
  WD 3:  Seg  8   260-297      9.04  488.26  1.6e-05       27.5%     46.90
  WD 4:  Seg 11   301-339      9.81  520.07  6.1e-06       25.0%     58.48
  WD 5:  Seg 15   343-382      7.88  440.20  7.3e-05       20.0%     57.94
  WD 6:  Seg 19   386-425      6.93  400.85  0.00025       17.5%     52.16
  WD 7:  Seg 25   447-485      7.47  423.35  0.00012       15.0%     41.82
  WD 8:  Seg 28   489-527      8.21  453.77  4.8e-05       15.0%     52.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  173-204    ---------KWQAHHN----IIKN-KKDGYFDIFRNIEKDIINTID
   WD 2  205-247    VYPEKILKSIKFGKESNVE-CCIS-SYNND-YLITGSSDGFIEIWN
   WD 3  260-297    --Q---KQNNLMIHDNPIV-TLCI-SKDDE-ILLSGDSKGLIKIWR
   WD 4  301-339    -GI---CLKIINAHNDSLI-SIQF-NNDQT-QILTSSYDKSVKIFG
   WD 5  343-382    -LK---CLKEFRKHEDSVVHSAIY-TLDNS-KIICATDQGKIFIYN
   WD 6  386-425    -LE---CITSFYVYFNKSE-NLIFPSLNNI-ILINKNLEDHILVCS
   WD 7  447-485    -ID---KDKDKDYDSPYFL-YACI-SPNFK-YVYCIAEDYNLYCFD
   WD 8  489-527    -SK---LLNQMKIHDKDIL-GIIH-HNNQN-IMASWSLDGKLNIIQ

   WD40 Template    TGE---CLRTLSGHTSGVT-SVSF-SPDGK-RLVSGSEDGTIKVWD