Input parameters:

  Query = CmaCh03G004900 (Len=774)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh03G004900, Len=774):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METDETEHVLPFQLQFDKPIASQVKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISPGRSIKSLCWRPDGKVIAVGL 80  
WD40-rpts      (______________________WD 1_____________________)(_________________WD 2_________

Query       81 EDGTVLLHDVENGKLLRSLKSHEAAVVSLNWVEDSQLITDNNENLSTYEDRTSRLFPPAPTVPRMPGLVSGDTGFIDDSE 160 
WD40-rpts      ________)   (____________________WD 3___________________)                       

Query      161 DSFTELSNSSQQRFNILCSGDKDGSICFSIFGIFPIGKINIHMLHIPLQDAGALCHLLNAEIYKVALSKDLCRLIVMCSG 240 
WD40-rpts                                                      (_________________WD 4__________

Query      241 ELVGDGHDPRNRQISVQGVHGMHSLVLDTSIFRKRKSELHQVAQQASNIWELTEVIRASLSVMSKQWSDAMHTFREKFDS 320 
WD40-rpts      ______)                                                                         

Query      321 LSTLIINHGLDSSPQEEFLSLLGGARTSPPIHQFLVNSLGEVGAKRVSKAVSGAGSELQLIVLDHLQPAAEIIGFRMGEL 400 
WD40-rpts                                                                                      

Query      401 LGLSRWRARFQSVGLDEKLMYEATEKAGTLLVQVERFMRVLSTVLQQISNFFNWLIRCIKLLMSEPSDQLLPYNSELVVI 480 
WD40-rpts                                                                                      

Query      481 FLKFLYNQDPVKKLLETSANDDNIEIDSELVERVRELALFGGFSDCEFLRRTLGMEFQQMESSFKEAFLMPFSTISRKIL 560 
WD40-rpts                                                                                      

Query      561 CEDLLSLFPLQSSSSCLSSSVPLSVSYYEDSSEAVSADLSCQQKFIDYISFKVPDDSFTDIANCIGIARGFIHDQSCSNE 640 
WD40-rpts                                                                                      

Query      641 DYSSFEAVLISIPDGSRCVDLSLYKDGQIVLLLNETASTSESSVGSYMMIMQADELPFVSMPRSPCLINWKVHQLKDYVV 720 
WD40-rpts                                                                                      

Query      721 PLQMENEKVRNIPHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEASDGE 774 
WD40-rpts                                                            

4 WD40-repeats found in QUERY=CmaCh03G004900 (Len=774):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-49       4.14  285.72  0.00875       20.0%     53.88
  WD 2:  Seg  5    50-89       7.06  406.29  0.00021       27.5%     56.81
  WD 3:  Seg  9    93-137      5.25  331.46  0.00212       30.0%     42.46
  WD 4:  Seg 17   209-247      4.38  295.62  0.00645       12.5%     31.91

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-49     METDETEHVLPFQLQFDKPIASQVKIAEWNPEKDLLA------MVTEDSKILLHR
   WD 2   50-89     FNW---------QRLWTISPGRSIKSLCWRPDGKVIA------VGLEDGTVLLHD
   WD 3   93-137    -GK---------LLRSLKSHEAAVVSLNWVEDSQLITDNNENLSTYEDRTSRLFP
   WD 4  209-247    -QD---------AGALCHLLNAEIYKVALSKDLCRLI------VMCSGELVGDGH

   WD40 Template    TGE---------CLRTLSGHTSGVTSVSFSPDGKRLV------SGSEDGTIKVWD