Input parameters:

  Query = CmaCh05G007320 (Len=1161)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh05G007320, Len=1161):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIRALASYREYTFAAYGSDIAVF 80  
WD40-rpts                                                                                      

Query       81 KRAHQVANWSSHNAKVNLLLLFGDHILSVDINGNMFMWHFKGNEDSPSPVGQVTLEGQFSPSCIMHPDTYLNKVMLGSLE 160 
WD40-rpts                                                                                      

Query      161 GSLELWNISSKKKLYEFKGWNSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240 
WD40-rpts                                                                                      

Query      241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFLANEPVLMSSSTDNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 
WD40-rpts                                                                                      

Query      321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTP 400 
WD40-rpts                                                                                      

Query      401 QAYVWRLQNFVLGEHILKPCPENPTPIKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKKEGRNAAHIGEVVGL 480 
WD40-rpts                                                                                      

Query      481 ACDSTNTHVISAGVGGDIKVWNFKERDLKSRWEIGSSVVKIVYHRVNGLLAVVTDDLVIRLFDIVASRMVRKFEGHTDRI 560 
WD40-rpts                                                                        (_____________

Query      561 TDLSFSEDGKWLLTSSMDGSLRIWDVILARQIDALQVDASITAFSISPNMDILATTHVDQNGVYLWVNQLMFSGSSNVDT 640 
WD40-rpts      ____WD 1________________)                                                       

Query      641 LASGKDIVNVKLPSVSTTEGMEFEGCDENPSKPPESKDLSGFHISSQQIPDLITLSLLPRSQWQSLVNLDIIKARNKPLE 720 
WD40-rpts                                                                                      

Query      721 PPKKPEKAPFFLPSLPSLSGEILFKPSESANTERAEKGVDNEQHKKSDITSSQFLQILESSSEVQNFSAFTDYIKGLSPS 800 
WD40-rpts                                                                                      

Query      801 TLDLELRMLQIIDDDDRQEPEKRPELISIELLLDYFIHEITCRNNFEFIQAFIRLFLKIHGETIRCQLTLQEKARKLLDI 880 
WD40-rpts                                                                                      

Query      881 QSSVWQGLDKIFQSSRYFSFSVLILPIYSIPNVIFTSYHSIRKPDGLNQNFESEMENYIGKRKPTIALSLFTALSASFSS 960 
WD40-rpts                           (_________________WD 2_________________)                   

Query      961 DKTKSARDFENGVVGLGIVAAMTDSHKFHEPFVSSKAVSPIVSSAKPAANFRGGLNLEKEQPEVVDELSESYTCVTSHFG 1040
WD40-rpts                                                          (_________________WD 3______

Query     1041 NHMIEKRVFFNGELEMVNGRSSNMVTYGVFSTSPMSFGVAERGLFAAEFLSSCHLCCKHLHGLDIFMYRGEKAFCSVECR 1120
WD40-rpts      __________)                                                 (___________________

Query     1121 DKHIRGDDCREKCGSKVMKDYSALPCSVAAPPALASGVVAA 1161
WD40-rpts      WD 4___________________)                 

4 WD40-repeats found in QUERY=CmaCh05G007320 (Len=1161):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   547-585      3.97  278.60  0.01091       42.5%     42.33
  WD 2:  Seg 49   902-941      3.53  260.65  0.01897        2.5%     19.51
  WD 3:  Seg 59  1013-1051     3.34  252.69  0.02422        2.5%     59.06
  WD 4:  Seg 67  1101-1144     4.65  306.71  0.00457       12.5%     51.45

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  547-585    -SRMV----RKFEGHTDRITDLSFSEDGKWLLTSSMDGSLRIWD
   WD 2  902-941    VLILP----IYSIPNVIFTSYHSIRKPDGLNQNFESEMENYIGK
   WD 3 1013-1051   -GGLN----LEKEQPEVVDELSESYTCVTSHFGNHMIEKRVFFN
   WD 4 1101-1144   HGLDIFMYRGEKAFCSVECRDKHIRGDDCREKCGSKVMKDYSAL

   WD40 Template    TGECL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD