Input parameters:

  Query = CmaCh11G000130 (Len=520)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G000130, Len=520):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQPVKKPRLEELWCAHSPEMDAAEADECNYTADEQEAALVALVDHRTREVHHLQQRISYYTRQLEEAEKRLQESESMLA 80  
WD40-rpts                                                                                      

Query       81 RFRGPRHTLPSITSQDCGFKCVKAEPRSPSPIHANGGSEAKQFISSNHSPSVLNHSNLAITAEQDKPCIPSSTGRVLEDQ 160 
WD40-rpts                                                                    (_________________

Query      161 SSRRKRKFEQKDHKELIALVRSSSSPLTAQCNASYYFSSQHKRKLRSLAPCPINNQLFVTSALDGVINLWQAQSKGSFAS 240 
WD40-rpts      WD 1________________)          (_________________WD 2_________________)         

Query      241 LLCTTDCMSQKQRRWPEDMAWHPEGNSLFSVYNADGGDSQISILNFNRTKESGCVTFLEDKPHVKGTINSISFLPWESVP 320 
WD40-rpts       (___________________WD 3___________________)         (_________________WD 4____

Query      321 FITGGSDHAVILWNMKDKENTWKPELLHRNMHSSAVMGVSGVQMKQLVLSAGADKRILGFDVQAGSVLFKHQLETKCMSV 400 
WD40-rpts      _____________)(_____________________WD 5____________________)   (_______________

Query      401 LPNPCDFNLFMVQTGSPEKQLRLFDIRLEKKEVHGFGWKQESSESQSALISQAWSPDGLHLTSGSADPVIHVFDIRYNSH 480 
WD40-rpts      ___WD 6_________________)         (_________________WD 7_________________)     (

Query      481 MPSRSIKAHQKRVFKAVWPHSLPLLISISSDLNIGLHKLA 520 
WD40-rpts      _________________WD 8________________)  

8 WD40-repeats found in QUERY=CmaCh11G000130 (Len=520):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   143-181      3.06  240.96  0.03467       10.0%     28.34
  WD 2:  Seg  4   192-231      7.69  432.31  9.3e-05       22.5%     52.87
  WD 3:  Seg  9   242-285      7.85  438.87  7.6e-05       15.0%     32.10
  WD 4:  Seg 12   295-334      7.18  411.34  0.00018       20.0%     45.80
  WD 5:  Seg 16   335-381      8.12  450.22  5.3e-05       25.0%     48.49
  WD 6:  Seg 19   385-425      5.09  324.84  0.00261       17.5%     36.00
  WD 7:  Seg 24   435-474     10.57  551.25  2.3e-06       37.5%     49.13
  WD 8:  Seg 27   480-518      7.99  444.89  6.3e-05       20.0%     52.61

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  143-181    -EQ-------DKPCIPSSTG--RVLEDQSSR-RKRKFEQ----KDHKELIALVR
   WD 2  192-231    -NA-------SYYFSSQHKR--KLRSLAPCPINNQLFVT----SALDGVINLWQ
   WD 3  242-285    LCT-------TDCMSQKQRR--WPEDMAWHP-EGNSLFSVYNADGGDSQISILN
   WD 4  295-334    -VT-------FLEDKPHVKG--TINSISFLPWESVPFIT----GGSDHAVILWN
   WD 5  335-381    MKDKENTWKPELLHRNMHSS--AVMGVSGVQ-MKQLVLS----AGADKRILGFD
   WD 6  385-425    -GS-------VLFKHQLETKCMSVLPNPCDF-NLFMVQT----GSPEKQLRLFD
   WD 7  435-474    GFG-------WKQESSESQS--ALISQAWSP-DGLHLTS----GSADPVIHVFD
   WD 8  480-518    -HM-------PSRSIKAHQK--RVFKAVWPH-SLPLLIS----ISSDLNIGLHK

   WD40 Template    TGE-------CLRTLSGHTS--GVTSVSFSP-DGKRLVS----GSEDGTIKVWD