Input parameters:

  Query = CsaV3_2G015120 (Len=485)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G015120, Len=485):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFVTMAEQRTEDGSSMKEGEEVEKEKSKKNVDPELLSCLLQPMSIGVDPDYIGIRRLLLYRKAEAAIFRRKDWRCNGKG 80  
WD40-rpts                                                                                      

Query       81 YVAFRNFIRRPRNWESSRLPSLQSTPGNSGRWVPPQSPLSLLHEVESWTSSKDLQSHRRSSFSSSASDNSQLQTRRVEFA 160 
WD40-rpts            (________________WD 1________________)                                    

Query      161 YSFVGMHCIFDQCKAAVMVVKFGHMSSDLLAYGASDGTLTVCNVSEPSSSVKQLLGHSKDVTDFDFSSNNQYIASSSMDK 240 
WD40-rpts         (_________________WD 2_________________)    (_________________WD 3___________

Query      241 TVRVWEISKGLCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIVTKLVLDSEVTSMDHDHTGQLLFCGD 320 
WD40-rpts      _____)   (_________________WD 4________________)   (________________WD 5________

Query      321 ANGYVYSVSMNSHTGALTRTHRQWCSSRRKSPVSTVQYRSFSLLARSPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKL 400 
WD40-rpts      ________)                (________________WD 6________________)                 

Query      401 APRIHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHRFPVIGVAWNHGENLLASSDFYGTVIVWK 480 
WD40-rpts      (_______________WD 7_______________)     (_________________WD 8________________)

Query      481 RSKTS 485 
WD40-rpts           

8 WD40-repeats found in QUERY=CsaV3_2G015120 (Len=485):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    87-124      7.22  412.80  0.00017       10.0%     31.39
  WD 2:  Seg  9   164-203      6.82  396.35  0.00028       22.5%     54.19
  WD 3:  Seg 13   208-246      9.89  523.11  5.5e-06       32.5%     55.91
  WD 4:  Seg 17   250-288      8.65  471.95  2.7e-05       22.5%     57.62
  WD 5:  Seg 21   292-329      7.17  410.94  0.00018       25.0%     56.99
  WD 6:  Seg 26   346-383      7.41  420.68  0.00013       17.5%     39.61
  WD 7:  Seg 30   401-436      6.77  394.13  0.00030       17.5%     44.69
  WD 8:  Seg 33   442-480      8.94  483.81  1.9e-05       30.0%     55.69

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   87-124    --FIRRPRNWESSRLPSLQSTP-GNSGRWVPPQSPLSLLHE
   WD 2  164-203    -VGMHCIFDQCKAAVMVVKFGHMSSDLLAYGASDGTLTVCN
   WD 3  208-246    -SSSVKQLLGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWE
   WD 4  250-288    -GLCIRVIYGVSSQLCIRFHPV-NNNFLSVGNANKEITVFN
   WD 5  292-329    -GRIVTKLVLD-SEVTSMDHDH-TGQLLFCGDANGYVYSVS
   WD 6  346-383    --SSRRKSPVSTVQYRSFSLLA-RSPVLLTCTQDGNLSFFS
   WD 7  401-436    AP----RIHSIRASFCPLLSLE-KGEYIVAGSEDSNVYFYD
   WD 8  442-480    -HTCVNKLQGHRFPVIGVAWNH-GENLLASSDFYGTVIVWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD