Input parameters:

  Query = CmaCh06G012970 (Len=526)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh06G012970, Len=526):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDV 80  
WD40-rpts                                                                                      

Query       81 LVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKEHPMLLSMLMAKEVFNEDEELGPDGKKLRPGISATVISELTD 160 
WD40-rpts                                                                                      

Query      161 CNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGGLDTNAVLFGRSSGEILSTLSG 240 
WD40-rpts               (___________________________WD 1__________________________)            

Query      241 HSRHKCCSFWSIIWGDFIYTEWSFKEGCWIVTSVKFVTRDDFILTGSADKTVRVWQPSDGGNYNCRHILKDHTAEVQAVT 320 
WD40-rpts              (_____________________WD 2_____________________)      (_________________

Query      321 VHATNNFFVTASLDNTWCFYDLASGLCLTQVAEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVG 400 
WD40-rpts      WD 3________________)   (__________________WD 4_________________)   (___________

Query      401 AVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIK 480 
WD40-rpts      _____WD 5________________)   (_________________WD 6________________)       (____

Query      481 TIPDLSGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET 526 
WD40-rpts      ______________WD 7_________________)          

7 WD40-repeats found in QUERY=CmaCh06G012970 (Len=526):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   170-228      5.99  362.28  0.00082       10.0%     45.89
  WD 2:  Seg  7   249-296      7.88  439.99  7.3e-05       27.5%     44.81
  WD 3:  Seg 11   303-341      8.39  461.42  3.8e-05       27.5%     53.94
  WD 4:  Seg 15   345-385      8.61  470.49  2.8e-05       40.0%     57.57
  WD 5:  Seg 19   389-426      8.33  458.93  4.1e-05       35.0%     52.52
  WD 6:  Seg 23   430-468      5.39  337.43  0.00176       27.5%     49.78
  WD 7:  Seg 27   476-516      7.40  420.26  0.00013       27.5%     54.37

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-228    KKRQ--------IPPTLVPVEALESYTQISSHPLHK--TNKP--GIISLDINHEKDVIATGGLDTNAVLFG
   WD 2  249-296    FWSIIWGDFIYTE-------------------WSFK--EGCW--IVTSVKFVTRDDFILTGSADKTVRVWQ
   WD 3  303-341    -YNC--------R-------------------HILK--DHTA--EVQAVTVHATNNFFVTASLDNTWCFYD
   WD 4  345-385    -GLC--------L-------------------TQVAEASGTE--GYTSAAFHPDGLILGTGTSEALVKIWD
   WD 5  389-426    -QKN--------V-------------------ARFD--GHVG--AVTAISFSENGYFLATAAHDG-VKLWD
   WD 6  430-468    -LKN--------F-------------------RTFA--PYDSETPTNSVEFDHSGSYLAIAGSD--IRVYQ
   WD 7  476-516    -WNC--------I-------------------KTIPDLSGTG--KATCLKFGTDAKYLAVGSMDRNLRIFG

   WD40 Template    TGEC--------L-------------------RTLS--GHTS--GVTSVSFSPDGKRLVSGSEDGTIKVWD