Input parameters:

  Query = CsaV3_2G032800 (Len=393)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G032800, Len=393):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRGGSNPGPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDGDLVSVTVHPSGD 80  
WD40-rpts         (__________________WD 1__________________)           (_________________WD 2__

Query       81 EIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDGSKLATGGVDGHLRIFEWPSLRPILDEPNAQKS 160 
WD40-rpts      ______________)           (________________WD 3________________)   (____________

Query      161 VRDMDFSLDSEFLASTSSDGSARVWKTDDGVPITTLTRNTDEKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKR 240 
WD40-rpts      _____WD 4________________)   (____________________WD 5___________________)   (__

Query      241 IGYKRLLRKPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSERVILTSSVEWGALVTK 320 
WD40-rpts      _______________WD 6________________)(___________________WD 7___________________)

Query      321 LNVPADWKEWQIYVLLISLFLASAVVFYIFYENSDSFWQFPLGRDQPARPRFDSFVGDSQSQSADDPFGPVDM 393 
WD40-rpts      (_________________WD 8________________)                                  

8 WD40-repeats found in QUERY=CsaV3_2G032800 (Len=393):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-45       7.32  416.85  0.00015       17.5%     25.09
  WD 2:  Seg  4    57-95       8.40  461.46  3.8e-05       17.5%     50.45
  WD 3:  Seg  9   107-144      8.43  462.84  3.6e-05       22.5%     45.63
  WD 4:  Seg 12   148-186      9.24  496.30  1.3e-05       27.5%     52.59
  WD 5:  Seg 16   190-234      6.87  398.37  0.00027       32.5%     52.33
  WD 6:  Seg 20   238-276      8.93  483.37  1.9e-05       27.5%     57.07
  WD 7:  Seg 24   277-320      7.28  415.44  0.00016       10.0%     56.15
  WD 8:  Seg 28   321-359      6.58  386.60  0.00038        7.5%     40.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-45     GGSN----PGPLSCGSWIRR-PENVNLALIGRS-----RPPDSSPSTLEIFS
   WD 2   57-95     -PLT----EFAFEECD--GD-LVSVTVHPSGDE-----IVCSTTRGGCKLFE
   WD 3  107-144    IKEL------PSLKDV--GP-QSCLTFSVDGSK-----LATGGVDGHLRIFE
   WD 4  148-186    -LRP----ILDEPNAQ--KS-VRDMDFSLDSEF-----LASTSSDGSARVWK
   WD 5  190-234    -GVP----ITTLTRNT--DEKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWD
   WD 6  238-276    -WKR----IGYKRLLR--KP-ACIMSISRDGKY-----LALGSKDGDVCVAE
   WD 7  277-320    VKKMEVSHMSKRLHLG--TP-IKTLDFCPSERV-----ILTSSVEWGALVTK
   WD 8  321-359    -LNV----PADWKEWQ--IY-VLLISLFLASAV-----VFYIFYENSDSFWQ

   WD40 Template    TGEC----LRTLSGHT--SG-VTSVSFSPDGKR-----LVSGSEDGTIKVWD