WDRR: WD40 Repeat Recognition
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| JobID: I8OOZ1659498060 Submitted: 2022-08-03 11:41:00 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79753730 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G000900 (Len=790) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G000900, Len=790): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MADLYGLHPLADYSYESSSAAPLDNLLVPVNFQAYSTASADYSHWLQVFGSGHVPSVSSGDYDAALAVVSEEESAGAIRE 80
WD40-rpts
Query 81 KIASHPLYPRLVDAFVDCQKIGAPPEVANILGRSVRGRDIGERTSGVSTCLGADPELDEFMETYCGILAKYKLDLSLPFV 160
WD40-rpts
Query 161 EASSFLNNMETQLSSLCNGTTRGYVSDETAAGSSEEDASAGEVELQDSLWANEDRELKDRLLRKYGGYLSSLKQEFSKTK 240
WD40-rpts
Query 241 KKVKLPKESRQILLDWWNVHCKWPYPTEMDKFELAESTGLDPKQINNWFINQRKRHWKASENMQFGDVHGSLEPSTHLYL 320
WD40-rpts
Query 321 FSSVVKFHNPFSSFLLVTSLFCSACETEAVAMTVDNILSHASLEWKFSQVFGERGAGEDIQDVDIISAIGFDKSGDNLAI 400
WD40-rpts (_________________WD 1______
Query 401 GDRGGRVIIFERNERKDTSKNILTRNKLEQLNLTPASHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVKWCVSPNGSRF 480
WD40-rpts __________) (_________________WD 2________________) (______________WD 3_
Query 481 ILSTNDKTIKLWKVTEHKAKTIKEMNHDRYVSSENALLAEMSFSSEQGKFSLSSGCHRDFSENTAMNKVASKDINDMIPD 560
WD40-rpts ____________)(________________WD 4________________)(_____________WD 5___________
Query 561 LDDTSWRRCRKVYGHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHC 640
WD40-rpts _) (_________________WD 6_________________) (_________________WD 7__
Query 641 NLLAYSSSRGFIRLVDMRQSALCDHSAILLRAEELSRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKGSSP 720
WD40-rpts _______________) (________________WD 8________________)
Query 721 VAVFKVHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNQLRMFSYGSGSAEGITTEAGKTPDR 790
WD40-rpts (____________________WD 9___________________)
 9 WD40-repeats found in QUERY=CmaCh11G000900 (Len=790): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 373-411 7.74 434.40 8.7e-05 12.5% 39.87 WD 2: Seg 5 415-453 4.25 290.37 0.00758 2.5% 10.13 WD 3: Seg 7 461-493 5.31 333.98 0.00196 25.0% 42.16 WD 4: Seg 10 494-531 5.00 321.09 0.00293 10.0% 10.96 WD 5: Seg 12 532-562 5.41 337.96 0.00173 10.0% 33.91 WD 6: Seg 15 566-605 6.61 387.58 0.00037 27.5% 53.37 WD 7: Seg 20 617-656 7.20 411.97 0.00017 25.0% 39.37 WD 8: Seg 23 676-713 7.40 420.34 0.00013 22.5% 41.05 WD 9: Seg 27 727-771 6.42 379.72 0.00047 15.0% 44.19Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 373-411 -ERGAGED-----IQ--DVDIISAIGF--DK-SGDNLAIGDRGGRVIIFE WD 2 415-453 -RKDTSKN-----IL--TRNKLEQLNL--TP-ASHPEYQYKTEFQSHEPE WD 3 461-493 --------------E--IEEKINKVKWCVSP-NGSRFILSTNDKTIKLWK WD 4 494-531 VTE--HKA-----KT--IKEMNHDRYV--SS-ENALLAEMSFSSEQGKFS WD 5 532-562 --------------L--SSGCHRDFSE--NT-AMNKVASKDINDMIPDLD WD 6 566-605 -WRRCRKV-----YGHAHDFNINSISN--NS-DGETFISAD-DLRINLWN WD 7 617-656 -DMKPSNM-----ED--LTEIITSAEF--HPLHCNLLAYSSSRGFIRLVD WD 8 676-713 -SRPKSFF-----TE--IISSISDIKF--SS-DGRFIISRD-YMNLKLWD WD 9 727-771 HEHLRPRLCELYDND--SIFDRFECCL--SA-DGLHFATGSYSNQLRMFS WD40 Template TGECLRTL-----SG--HTSGVTSVSF--SP-DGKRLVSGSEDGTIKVWD |
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