WDRR: WD40 Repeat Recognition
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| JobID: I7RRW1659500608 Submitted: 2022-08-03 12:23:28 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79751446 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh13G001820 (Len=537) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh13G001820, Len=537): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKMINNGYNSSFNSNSVGLMSNAAATTASLSSSASTTNANSQSQGLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKSFSQ 80
WD40-rpts (________________
Query 81 VTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVGGGNGVRAIGFAGNNGTGKAVNGASRSGSLVGSNGSHSILN 160
WD40-rpts ____WD 1___________________) (_____________WD 2____________) (_______________
Query 161 PNYDGKGTYLIFNVGDTIFIGDLNSPDKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAW 240
WD40-rpts _WD 3________________) (_________________W
Query 241 IPESDAAFVVAHADGNLYGKDGTVDTSFPVIKDQTQFSVAHARSSKSNPIARWHICQGPINNVAFSCDGIYLATVGRDGY 320
WD40-rpts D 4_________________) (_________________WD 5____________
Query 321 LRVFDYLKEQLICGGKSYYGALLCCTWSGDGKYILTGGEDDLVTVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPTSDD 400
WD40-rpts ____) (_________________WD 6________________) (_______________________WD 7__
Query 401 TEENVVYRFGSVGQDTQLLLWDLSMDEIVVPLRRCPPGGSPTFSTGSQSAHWDSITPLGTLQPAPSMRDVPKLSPVVAHR 480
WD40-rpts _____________________)(_____________________WD 8____________________) (_______
Query 481 VHTEPLSGLIFTQESILTACREGHVKIWMRPSSETQSSNPESLVGSSTLASTRVYWF 537
WD40-rpts _________WD 9_______________)
 9 WD40-repeats found in QUERY=CmaCh13G001820 (Len=537): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 64-108 3.25 248.89 0.02721 15.0% 20.01 WD 2: Seg 6 111-141 3.20 246.76 0.02904 17.5% 34.67 WD 3: Seg 9 145-182 6.92 400.33 0.00025 17.5% 53.02 WD 4: Seg 16 222-261 5.87 357.14 0.00096 25.0% 49.50 WD 5: Seg 22 287-325 8.64 471.60 2.7e-05 25.0% 55.87 WD 6: Seg 26 329-367 9.28 498.07 1.2e-05 22.5% 57.22 WD 7: Seg 30 371-422 7.09 407.68 0.00020 27.5% 55.81 WD 8: Seg 34 423-469 4.12 284.82 0.00900 12.5% 10.34 WD 9: Seg 36 473-509 5.53 342.98 0.00148 15.0% 52.02Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 64-108 TH-PPGFLPFSHGKSFSQVTLAQLKDKPAQA-------------G------PTPSSNSSTSASSG WD 2 111-141 YA-AAKFLGVGGGNGVRAIGF-----A----------------------------GNNGTGKAVN WD 3 145-182 -R-SGSLVGSNGSHSILNPNY-----DGKGT-------------Y------LIFNVGD-TIFIGD WD 4 222-261 -Q-HYNKEGSVNNSRCTSVAW-----IPESD------------AA------FVVAHADGNLYGKD WD 5 287-325 -S-NPIARWHICQGPINNVAF-----SCDGI-------------Y------LATVGRDGYLRVFD WD 6 329-367 -E-QLICGGKSYYGALLCCTW-----SGDGK-------------Y------ILTGGEDDLVTVWS WD 7 371-422 -R-KVVAWGEGHNSWVSGVAF-----DSYWSSPTSDDTEENVVYR------FGSVGQDTQLLLWD WD 8 423-469 LSMDEIVVPLRRCPPGGSPTF-----STGSQ-------------SAHWDSITPLGTLQPAPSMRD WD 9 473-509 -L-SPVVAHRVHTEPLSGLIF-----TQES---------------------ILTACREGHVKIWM WD40 Template TG-ECLRTLSGHTSGVTSVSF-----SPDGK-------------R------LVSGSEDGTIKVWD |
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