WDRR: WD40 Repeat Recognition
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| JobID: I7BWQ1659505415 Submitted: 2022-08-03 13:43:35 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79744774 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh19G000570 (Len=579) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh19G000570, Len=579): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFEEGAEWKMSLISQNVAVISSTENVNGDNTVGSSSLLRKVDASDVENSGVDTTRSKKRKKEHKKEDEQIVKEQQKEMEK 80
WD40-rpts
Query 81 LENFLFGSLYSPVEFGKDEEKNDFSAEEKAPALYIMDRSANNSLSVYENDVGLLDESSSKEEAQQRKPVWVDEEEEKASV 160
WD40-rpts (_______________
Query 161 NITNVSRLRKLRKEEDEKSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSRSGSDDDDDLSSDDENAVALADGYDNVDSID 240
WD40-rpts _____________________WD 1____________________________________) (_________
Query 241 DILRTNENLVAKSGAKLLPGLLEYSRLVDANAQEPSNGPIHSVQFHRNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLE 320
WD40-rpts _____WD 2_____________) (_________________WD 3________________) (_________
Query 321 DCPIRKASFLPDGSQVIISGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKEL 400
WD40-rpts ________WD 4________________) (_________________WD 5_________________) (__
Query 401 IGTLKMNGTVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQ 480
WD40-rpts ______________WD 6________________) (_________________WD 7_________________)
Query 481 EFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYPSCLDFSPEGGYMA 560
WD40-rpts (__________________WD 8_________________) (_________________WD 9_____
Query 561 VGNAAGKVLLYKLHHYQHA 579
WD40-rpts ___________)
 9 WD40-repeats found in QUERY=CmaCh19G000570 (Len=579): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 145-222 3.80 271.81 0.01345 12.5% 8.32 WD 2: Seg 4 231-263 4.43 297.77 0.00603 0.0% 25.26 WD 3: Seg 7 267-305 8.17 451.98 5.0e-05 12.5% 48.34 WD 4: Seg 10 311-349 8.26 455.73 4.5e-05 15.0% 56.48 WD 5: Seg 14 355-394 6.53 384.20 0.00041 17.5% 51.73 WD 6: Seg 18 398-435 8.21 453.67 4.8e-05 35.0% 56.78 WD 7: Seg 22 439-478 7.54 426.31 0.00011 20.0% 54.54 WD 8: Seg 26 487-527 6.90 399.85 0.00025 20.0% 54.30 WD 9: Seg 30 534-572 7.77 435.71 8.3e-05 15.0% 38.14Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 145-222 QRKPVWVDEEE-E-KASVNITNVSRLRKLRKEEDEKSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSRSGS--DDDDDLSSD WD 2 231-263 ------DGYDN-V-DSIDDI---------------------------------------LRTNENLVAKSG--AKLLPGLLE WD 3 267-305 -LVDANAQEPS-N-GPIHSVQ--------------------------------------FHRNAQLLLATG--LDRKLRFFQ WD 4 311-349 -NTKIQSIFLE-D-CPIRKAS--------------------------------------FLPDGSQVIISG--RRKFFYSLD WD 5 355-394 -VDKIGPLVGR-EEKSLEVFE--------------------------------------VSPDSSTVAFIG--NEGYILLVS WD 6 398-435 -KELIGTLKMN---GTVRSLA--------------------------------------FADDGRQLLSSG--GDGQVYHWD WD 7 439-478 -RTCIHKAVDEGC-INGTALC--------------------------------------TSPNGALFAAGS--DSGIVNIYN WD 8 487-527 -KKPLKAIENL-T-TKVDFLK--------------------------------------FNHDAQILAICSRMKKSSLKLIH WD 9 534-572 -FSNWPPPKKN-L-QYPSCLD--------------------------------------FSPEGGYMAVGN--AAGKVLLYK WD40 Template TGECLRTLSGH-T-SGVTSVS--------------------------------------FSPDGKRLVSGS--EDGTIKVWD |
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