Input parameters:

  Query = CmaCh11G011140 (Len=1021)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G011140, Len=1021):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSYAKVNSNNSSTTNKSANGFLPNSLKFISSCIKTASSGVRSASATVAASISGDAHDHKDQVLWAGFDRLELSPSFFKH 80  
WD40-rpts                                                                                      

Query       81 VLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFLQMQPLPAESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLV 160 
WD40-rpts                        (_________________WD 1________________)     (_________________

Query      161 RDGYPNGHSENITLSPTAVRFYSLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYPVPQLG 240 
WD40-rpts      _WD 2_________________)                                                         

Query      241 GQGPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPTPPGVSPSTSPSSGSLVARYAMESSKHLAAGLINLGDKG 320 
WD40-rpts                                                                                      

Query      321 YKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLASTETDADGMVVVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTAST 400 
WD40-rpts         (___________________WD 3__________________)   (_________________WD 4_________

Query      401 HGSNINIFRIMLSRLQNGSGTHSYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVL 480 
WD40-rpts      ________)                             (_____________WD 5_____________)          

Query      481 QMHNSLVDGPNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCNSGWLNTVSMSAVSASGKVSIPSGAVSA 560 
WD40-rpts                                                                                      

Query      561 VFHRCTPQNLQSPQLSSNTLEHLLVFTPSGHVIQHKLLPPMGGECGETILRSPNASMQMKDEELRVKVEPIQWWDVCRRA 640 
WD40-rpts                                                                                      

Query      641 AWPEREECISSITLRRKGTAEAVEDTSYKHEHLEAQESEKPRDCSLLYLSNSEVQINSGRIPIWQKSKVHFYTMSFPGSN 720 
WD40-rpts                                                                                      

Query      721 EPSSIKDHMNGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQSDWHGRSHAGAKSSSPSLGSHCAGMKYSEGDIISDVAYA 800 
WD40-rpts                                                                                      

Query      801 PIAKSVGDIKMEEKDGSVLSSPVMKEKSFQEWASVSSKQSSTGLSPVEGSDFTNSPSTVTICSLSTDRTILRAVQSSKCG 880 
WD40-rpts                                                                                      

Query      881 GASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKAMGLSNCRDPPALTDDIDSSGSPHYREKCEEDGDTDDML 960 
WD40-rpts                                                                                      

Query      961 GGIFAFSEEVLKGSISSHVIVFCNNRLMDFKCLREQSTGCHRRCCVRASILINKIGLVGFR 1021
WD40-rpts                                                                   

5 WD40-repeats found in QUERY=CmaCh11G011140 (Len=1021):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    99-137      2.77  229.16  0.04963       12.5%     18.13
  WD 2:  Seg  9   143-183      3.83  272.74  0.01307       10.0%      2.23
  WD 3:  Seg 19   324-366      4.72  309.82  0.00415       22.5%     22.41
  WD 4:  Seg 21   370-409      7.13  409.25  0.00019       25.0%     58.08
  WD 5:  Seg 26   439-470      4.35  294.54  0.00666       12.5%     45.71

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   99-137    -PNVSE--L-VSRRDDPATFLQMQPLPAESAAGQE-GFG-ASHPI
   WD 2  143-183    CDETQS--SGLMQSGRNGLVRDGYPNGHSENITLS-PTA-VRFYS
   WD 3  324-366    LSKYYQEFV-PDGSNSPLSSNSSRKVGRLASTETDADGM-VVVKD
   WD 4  370-409    -KAVVS--Q-FKAHSSPISALCFDPSGTLLVTAST-HGSNINIFR
   WD 5  439-470    -----------GMTSAVIQDICFSHYSQWIAIVSS-RGT-CHIFA

   WD40 Template    TGECLR--T-LSGHTSGVTSVSFSPDGKRLVSGSE-DGT-IKVWD