Input parameters:

  Query = CsaV3_5G000280 (Len=720)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G000280, Len=720):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSVSGDEECPFFDAQEINAPSISEPNCDGIEAAFDSHPRFNNWVDGSLVYDVWNRSPKSVHERRRKFLTWMGMGLDRTP 80  
WD40-rpts                                                                                      

Query       81 PPCHGNSLSLGCDWREGDVGRLRDNSGVESSDFEDVFCSGRSSISCWSTDDIELAEMASTNTVLYRDDVIKGECGRKNGD 160 
WD40-rpts                                                    (_________________WD 1____________

Query      161 LKPSVRFAMAEELEETSSSSPSFQQMMQMEAERVNIPSRSARRVNKRWLKKLRSAACIFDKHGKSTRLVVDDDSAAGSRV 240 
WD40-rpts      ____)     (_________________WD 2________________)   (_______________WD 3________

Query      241 RRVKVRHCKKHLKELSAMYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCIYFTV 320 
WD40-rpts      ______)          (_________________WD 4________________)          (_____________

Query      321 NRLSELKPLLVEKEKLANSMTLRKTSESACIIFPPKIFRILDRPLHEFHGHSGDILDLSWSKNNYLLSSSIDKTVRLWRL 400 
WD40-rpts      ____________WD 5_________________________)(________________WD 6_______________)(

Query      401 GSDDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPSCQVVDWIDIREIVTAVSYHPDGRGGIVGSINGTCRF 480 
WD40-rpts      __________________WD 7__________________)(__________________WD 8________________

Query      481 FKVIGDNNLELDGEICLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIQGLNVIQKYKGPCNTGNQTSASFTSDG 560 
WD40-rpts      _)            (_________________WD 9_________________)   (_________________WD10_

Query      561 KHIISASGDSNVYVWNCSYKNEAVLSPVKKIKSYEYFSSNASIAVPWYGLRCNTEAGERHFPGMQRNSSETFPLPSPAFF 640 
WD40-rpts      _______________)(_________________WD11_________________)    (________________WD1

Query      641 SLSQELLESFPKGSATWPEEKLPTSSLLPKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLPVPI 720 
WD40-rpts      2________________)               (_________________WD13________________)        

13 WD40-repeats found in QUERY=CsaV3_5G000280 (Len=720):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   127-165      5.64  347.74  0.00128       12.5%     35.33
  WD 2:  Seg  5   171-209      6.97  402.48  0.00023       20.0%     45.65
  WD 3:  Seg  9   213-247      4.83  314.20  0.00362       15.0%     29.50
  WD 4:  Seg 12   258-296      9.15  492.63  1.4e-05       27.5%     50.50
  WD 5:  Seg 17   307-362      5.22  330.46  0.00219       10.0%     19.95
  WD 6:  Seg 21   363-399      7.49  423.98  0.00012       27.5%     51.44
  WD 7:  Seg 25   400-441      7.68  431.84  9.4e-05       37.5%     54.70
  WD 8:  Seg 29   442-482      7.17  410.84  0.00018       30.0%     56.00
  WD 9:  Seg 34   495-534      6.68  390.61  0.00034       17.5%     49.06
  WD10:  Seg 37   538-576      9.00  486.38  1.7e-05       32.5%     59.10
  WD11:  Seg 41   577-616      6.38  378.20  0.00050        2.5%     48.39
  WD12:  Seg 45   621-658      5.42  338.61  0.00170       17.5%     14.29
  WD13:  Seg 46   674-712      5.60  346.00  0.00135       20.0%     39.71

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  127-165    -W------------ST-DDIELA----EMASTNTVLYRD-DVIKGECGRKNGDLKPSV
   WD 2  171-209    -E------------EL-EETSSS----SPSFQQMMQMEA-ERVNIPSRSARRVNKRWL
   WD 3  213-247    -R------------SA-ACIFDK----HGKSTRLVVDDD-S----AAGSRVRRVKVRH
   WD 4  258-296    -M------------YM-GQDIKA----HEGAILTMKFSP-NGQYLATGGDDGIVKLWQ
   WD 5  307-362    DIPEIDPSCIYFTVNR-LSELKPLLVEKEKLANSMTLRK-TSESACIIFPPKIFRILD
   WD 6  363-399    --------------RP-LHEFHG----HSGDILDLSWSK-NN-YLLSSSIDKTVRLWR
   WD 7  400-441    LG-----------SDD-CLRVFS----HSNYVTCVHFNPMDENYFISGSIDGKIRIWG
   WD 8  442-482    IP------------SCQVVDWID----IREIVTAVSYHP-DGRGGIVGSINGTCRFFK
   WD 9  495-534    -I------------CL-SSKKKS----PSKKITGFQYSAEDSSRIMVSSADSRIRIIQ
   WD10  538-576    -V------------IQ-KYKGPC----NTGNQTSASFTS-DGKHIISASGDSNVYVWN
   WD11  577-616    CS------------YK-NEAVLS----PVKKIKSYEYFS-SNASIAVPWYGLRCNTEA
   WD12  621-658    -F------------PG-MQRNSS----ETFPLPSPAFFS-LSQELLE-SFPKGSATWP
   WD13  674-712    -M------------HK-SRYKFL----KLSCQNTSSSHA-WGLVIVTAGWDGRIRSFH

   WD40 Template    TG------------EC-LRTLSG----HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD