Input parameters:

  Query = sp_Q5TAQ9_DCAF8_HUMAN (Len=597)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q5TAQ9_DCAF8_HUMAN, Len=597):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDS 80  
WD40-rpts      (__________________WD 1_________________)                                       

Query       81 MEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQRKRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRE 160 
WD40-rpts                                                                                      

Query      161 RELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF 240 
WD40-rpts                           (_________________WD 2_________________)    (______________

Query      241 QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPAS 320 
WD40-rpts      ____WD 3_________________)        (________________WD 4________________)(_______

Query      321 KLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGT 400 
WD40-rpts      ______________WD 5_____________________)               (_________________WD 6___

Query      401 ELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV 480 
WD40-rpts      ______________)      (__________________WD 7__________________)   (_____________

Query      481 VNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLHQTDLFDSHMLWFLMHHLRQRRHHRR 560 
WD40-rpts      ____WD 8_________________)  (_________________WD 9________________)             

Query      561 WREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 597 
WD40-rpts                                           

9 WD40-repeats found in QUERY=sp_Q5TAQ9_DCAF8_HUMAN (Len=597):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       6.18  370.10  0.00064       15.0%     -12.87
  WD 2:  Seg  6   182-221     11.14  574.71  1.1e-06       37.5%     55.46
  WD 3:  Seg 10   226-266      7.35  418.10  0.00014       30.0%     52.94
  WD 4:  Seg 15   275-312      6.86  398.13  0.00027       17.5%     52.91
  WD 5:  Seg 19   313-360      6.12  367.58  0.00069       12.5%     52.89
  WD 6:  Seg 24   376-415      8.62  470.73  2.8e-05       20.0%     47.43
  WD 7:  Seg 27   422-463      7.05  405.73  0.00021       27.5%     55.80
  WD 8:  Seg 31   467-506      7.30  416.40  0.00015       20.0%     55.06
  WD 9:  Seg 35   509-547      7.74  434.28  8.7e-05       15.0%     52.72

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-41     MSS-------KGSSTDGRTDL-ANGSLS---SSP-EE--M-SGAEEGRETSSGIEV
   WD 2  182-221    RFR-------LQHGLEGHTGC-VN-TLH---FNQ-RG--T-WLASGSDDLKVVVWD
   WD 3  226-266    -QP-------VLDFESGHKSN-VF-QAK---FLP-NSGDS-TLAMCARDGQVRVAE
   WD 4  275-312    ----------NTKRVAQHKGA-SH-KLA---LEP-DS--PCTFLSAGEDAVVFTID
   WD 5  313-360    LRQDRPASKLVVTKEKEKKVG-LY-TIY---VNPANT--H-QFAVGGRDQFVRIYD
   WD 6  376-415    FCP-------HHLVNSESKAN-IT-CLV---YSH-DG--T-ELLASYNDEDIYLFN
   WD 7  422-463    -AQ-------YVKRYKGHRNN-AT-VKGVNFYGP-KS--E-FVVSGSDCGHIFLWE
   WD 8  467-506    -CQ-------IIQFMEGDKGGVVN-CLE---PHP-HL--P-VLATSGLDHDVKIWA
   WD 9  509-547    -AE-------ASTELTGLKDV-IK-KNK---RER-DE--D-SLHQTDLFDSHMLWF

   WD40 Template    TGE-------CLRTLSGHTSG-VT-SVS---FSP-DG--K-RLVSGSEDGTIKVWD