Input parameters:

  Query = CmaCh11G002620 (Len=491)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G002620, Len=491):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MISAVSWVPKGVCKPLPVAADPPSKETIDELLKSKDVLEEDSSKHSEDEVDKEDMDVEDANDEEIANALAVAQALGKSSK 80  
WD40-rpts                                                                                      

Query       81 TTMSETKYDDIAEGLKELDMDHYDDEDDEIELFTSGAGDLYYKSNDMDPYLKDKDDDDSEDLEDETIKPTDAVIVCACNE 160 
WD40-rpts                                                                 (_________________WD 

Query      161 DDVCICEGYDAGDPNFYIHHEIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPAIEIWDLDIRDEVQPCVVLGGIAEKK 240 
WD40-rpts      1________________)   (_________________WD 2________________)                    

Query      241 KKKNKKKEKKTLITYKENSHTDSVLGLAWNKEYRNILASASADKQVKIWDVSTEKCNITMQHHTDKVQAVAWNYHSSQVL 320 
WD40-rpts                      (______________WD 3______________)   (_________________WD 4_____

Query      321 LSGSFDHSVVLKDGRNPSHSGYKWLVTADVESLAWDPHTEHMFVVSLEDGTVKGFDIRNATTETSSESKASFTLHAHEKA 400 
WD40-rpts      ____________)   (_________________WD 5_________________)           (____________

Query      401 VCSVAYNPAAPNLLATGSTDKMVKLWDLSNNEPSCVASTNPKAGAVFSLSFSEDCPFLMAIGGSKGKLEVWDTLSDAAVS 480 
WD40-rpts      _____WD 6_________________)(____________________WD 7___________________)        

Query      481 RKFGNYRQPKS 491 
WD40-rpts                 

7 WD40-repeats found in QUERY=CmaCh11G002620 (Len=491):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   140-178      3.83  272.85  0.01302       12.5%     48.72
  WD 2:  Seg  7   182-220      6.50  383.03  0.00043       15.0%     23.88
  WD 3:  Seg 10   257-290      7.03  404.85  0.00022       25.0%     44.77
  WD 4:  Seg 13   294-333      8.07  448.07  5.7e-05       30.0%     55.89
  WD 5:  Seg 17   337-376      6.86  398.14  0.00027       27.5%     53.37
  WD 6:  Seg 21   388-427      7.89  440.67  7.2e-05       35.0%     54.09
  WD 7:  Seg 25   428-472      7.38  419.40  0.00014       30.0%     59.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  140-178    -E----DLEDETIKPTDAVIVCACNE-DD-V-C-I-CEGYDAGDPNFYI
   WD 2  182-220    -I----IIPAFPLCTAWLDCPLKGGE-RG-N-F-I-AVGSMEPAIEIWD
   WD 3  257-290    -----------ENSHTDSVLGLAWNK-EY-R-NIL-ASASADKQVKIWD
   WD 4  294-333    -E----KCNITMQHHTDKVQAVAWNYHSS-Q-V-L-LSGSFDHSVVLKD
   WD 5  337-376    -P----SHSGYKWLVTADVESLAWDP-HT-E-H-MFVVSLEDGTVKGFD
   WD 6  388-427    -S----KASFTLHAHEKAVCSVAYNP-AAPN-L-L-ATGSTDKMVKLWD
   WD 7  428-472    LSNNEPSCVASTNPKAGAVFSLSFSE-DC-PFL-M-AIGGSKGKLEVWD

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSP-DG-K-R-L-VSGSEDGTIKVWD