Input parameters:

  Query = CmaCh18G006800 (Len=344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G006800, Len=344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTLKFNPAGSVIASGSHDKEIFL 80  
WD40-rpts      (__________________WD 1__________________) (_________________WD 2_______________

Query       81 WNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSD 160 
WD40-rpts      _)    (_________________WD 3________________)   (_________________WD 4__________

Query      161 DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240 
WD40-rpts      _______)   (________________WD 5________________)   (_________________WD 6______

Query      241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNE 320 
WD40-rpts      __________)       (___________________WD 7__________________)   (_______________

Query      321 CVFHPSEPIVGSCSSDKQIYLGEI 344 
WD40-rpts      __WD 8________________) 

8 WD40-repeats found in QUERY=CmaCh18G006800 (Len=344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       5.03  322.30  0.00282       15.0%     10.67
  WD 2:  Seg  3    44-82       9.66  513.86  7.4e-06       32.5%     51.40
  WD 3:  Seg  7    87-125      9.65  513.41  7.5e-06       32.5%     56.22
  WD 4:  Seg 11   129-168      9.07  489.15  1.6e-05       40.0%     56.62
  WD 5:  Seg 15   172-209      8.23  454.49  4.7e-05       30.0%     57.39
  WD 6:  Seg 19   213-251     10.31  540.67  3.2e-06       37.5%     56.55
  WD 7:  Seg 23   259-301      8.61  470.32  2.9e-05       35.0%     57.32
  WD 8:  Seg 27   305-343      9.16  493.18  1.4e-05       30.0%     58.42

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     ---MQVPSGGE----NALATVGPRPMEW-STVPYNAPQGPGPNGKQRTSS
   WD 2   44-82     ESPIMLLAGHQ----SAIYTLKFNPAGS-VIA------SGSHDKEIFLWN
   WD 3   87-125    CKNYMVLRGHK----NAVLDLHWTTDGS-QIV------SASPDKTLRAWD
   WD 4  129-168    GKQIKKMAEHS----SFVNSCCPTRRGPPLIV------SGSDDGTAKLWD
   WD 5  172-209    RGAIQTFPDKY----Q-ITAVSFSDASD-KIF------TGGIDNDVKVWD
   WD 6  213-251    GEVMMTLQGHQ----DMITGMQLSPDGS-YLL------TNGMDCKLCIWD
   WD 7  259-301    NRCVKIFEGHQHNFEKNLLKCSWSPDGS-KVT------AGSSDRMVYVWD
   WD 8  305-343    RRILYKLPGHT----GSVNECVFHPSEP-IVG------SCSSDKQIYLGE

   WD40 Template    GECLRTLSGHT----SGVTSVSFSPDGK-RLV------SGSEDGTIKVWD