Input parameters:

  Query = CsaV3_3G045920 (Len=1489)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G045920, Len=1489):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGEYRFSMDQKDIVRILVATIDNFTRGRLINKEQRNLHKEQCAERLASEGGSNDKDTEVRYSDQAVLANLDWGIEALEE 80  
WD40-rpts                                                                                      

Query       81 ALNTSNMETKLARLDHAEKMLQVCALLNSNEKTAGVPNFYLAAWAHLNLSYLWKLRGNAHNSVLHILEMFIVDPFFSRND 160 
WD40-rpts                                                                                      

Query      161 FAPELWKELFLPHMSSIVGWYSEERHRLMIEVIPDSSDLSFTADLDQFFNESLIFSLRPDQAEKLQKLEQLYGASLDENT 240 
WD40-rpts                                                                                      

Query      241 RLFAKYFKDCMNSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSIKPKSKDGTAEASWPKGASS 320 
WD40-rpts                                                                                      

Query      321 PANNIEKFAGQYSQSDLLEENEDDSDQEPYDSYDLSDTATYKLLSPSSTRASEDEQIGPKEEVSKMGSRKHSPTIFSPIA 400 
WD40-rpts                                                                                      

Query      401 SPPVPSPRVLYPIVNEKKSESRTLRLLSSRGEQRVATSALGSPATRSDYSSNSVESDGEKDGHRRIIYKPTHNTTYDNVS 480 
WD40-rpts                                                                                      

Query      481 SQDFENCSIDKLEDESRSRSSENVTHMVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSS 560 
WD40-rpts                                                                                      

Query      561 TVMPKTNYVLKRLTTSWQEQHPDVAQDCSWTGTSVSTVGSTFKRRSSVATTPCQPFHGPLNRTYESLNQKGKRLMQEAVS 640 
WD40-rpts                                                                                      

Query      641 LSPTSVISQATVEKIINSLKPFVSCLCNFENLKQCETAVLTMAGFWKDSKGDPAVHSYLSELAVVNGFMEILLNSREREV 720 
WD40-rpts                                                                                      

Query      721 LRTSIYVLSELICADGSVGESLSSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTKLSAHELIPSLAQLLQKKNEDFDDL 800 
WD40-rpts                                                                                      

Query      801 PFVIEPKDAAIAMLEQILMGGDEYSQSRNVASLISAEGCPALVKFLDGEEVRRPILSMLLCCMRVDKGCKDSIVEKIELA 880 
WD40-rpts                                                                                      

Query      881 PVLELLYTGNEDDRGLCVAFLSELVQMNRRTQCNQILQQIKNEGAFSTMHTLLTHLPKATIEQQPSIASLLLQLDLLVEP 960 
WD40-rpts                                                                                      

Query      961 RKMSIYREESIDALFEAFRRKDNYNVQTAAADALLYLSGRLTSSGKCYAKSWLLKLAGFDQPYNALMKDEGLRKPDSELS 1040
WD40-rpts                                                                                      

Query     1041 EREEEEKAISVWEKRVALVICNHEKGYIFKVMKECLKSKSLEMEKSCLVIVSWLCHMVSTLPDTGVRETARRFLLDELVN 1120
WD40-rpts                                                                                      

Query     1121 VLQSSNSQEDKILACLALKTFISDPAALEELGLHARSINKTLRKLRRSSSVVNAIMKALMNLPSVDTTELWSYTEVGAID 1200
WD40-rpts                                                                              (_______

Query     1201 CSSNGEVLSLLHLEGRVLSSHSDGTIKVWDARNKVLRLIQEARKHSKAVTCLCVSSSYDTVYSGSLDKTIRVWSIKSEEI 1280
WD40-rpts      _________WD 1________________)(___________________WD 2___________________)  (___

Query     1281 QCVQVHEVKEPVYDLKVNGKLACFVSPGNGVKVFNFFGVPKHINFNKYVKCLALSEDKLYCGCSGDSIMEVDLSKNATST 1360
WD40-rpts      ______________WD 3________________)(________________WD 4_______________)        

Query     1361 FYTGVRKLLWKQNIYSLHIHGDLLSAAGSTVDGTAGKTFSLANKTTVGSFSTGVDIHHMAASTDFLFTASRLGMLIEIWA 1440
WD40-rpts        (_____________________WD 5____________________)   (________________WD 6_______

Query     1441 KEKHTKIGSVKIGSSASGSHTKITSLTTDDGGLLLVGTSDGKIQVWALE 1489
WD40-rpts      ________)(________________WD 7________________)  

7 WD40-repeats found in QUERY=CsaV3_3G045920 (Len=1489):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7  1193-1230     6.37  377.83  0.00050       32.5%     53.16
  WD 2:  Seg 11  1231-1274     8.80  478.09  2.2e-05       30.0%     52.75
  WD 3:  Seg 15  1277-1315     7.26  414.66  0.00016       17.5%     47.80
  WD 4:  Seg 19  1316-1352     5.01  321.55  0.00289       17.5%     44.56
  WD 5:  Seg 24  1363-1409     7.09  407.57  0.00020       20.0%     51.33
  WD 6:  Seg 28  1413-1449     5.05  323.15  0.00275       12.5%     49.97
  WD 7:  Seg 31  1450-1487     7.10  407.78  0.00020       32.5%     42.03

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1193-1230   YT-------E-VGAIDCSSNGEVLSLLHLEG-RVLSSHSDGTIKVWD
   WD 2 1231-1274   AR---NKVLRLIQEARKHSKAVTCLCVSSSYDTVYSGSLDKTIRVWS
   WD 3 1277-1315   -S-------EEIQCVQVHEVKEPVYDLKVNGKLACFVSPGNGVKVFN
   WD 4 1316-1352   -F-------FGVPKHINFNKYVKCLALSEDK--LYCGCSGDSIMEVD
   WD 5 1363-1409   TGVRKLLWKQNIYSLHIHGDLLSAAGSTVDGTAGKTFSLANKTTVGS
   WD 6 1413-1449   -G-------VDIHHMAASTDFLFTA--SRLGMLIEIWAKEKHTKIGS
   WD 7 1450-1487   -V-------KIGSSASGSHTKITSL-TTDDGGLLLVGTSDGKIQVWA

   WD40 Template    TG-------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD