JobID: HZOE81659460471 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh02G017140 (Len=656)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh02G017140, Len=656):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDEAEIYDGIRAQFPLTFGKQSKAQTSLEAIHNTTRRNTSATVSEKSSSAQNNNGLPSISSSSKAWLDSLRTSKNPNTH 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 VSGDSEPSKITRDVDADEGPRIGPPRPRTELKLNDDSDDNDDDDAMVGPPPPPPRGEGSDDDEDDDGEMIGPPRPPPSSN 160 
WD40-rpts      ____________)                                                                   

Query      161 LDDSDAEEEEYEENRYRIPQSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQI 240 
WD40-rpts                  (____________________WD 2____________________)          (___________

Query      241 RNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTCGEWHPKNKETILTSSEDGSLRIWD 320 
WD40-rpts      _____WD 3_______________)          (____________________WD 4___________________)

Query      321 VNDFKSQKQVIKPKLARPGRIPVTTCAWDREGKSIVGGMGDGSIQIWNLKPGWGSRPDIHVENSHSDDITALKFSSDGTI 400 
WD40-rpts                 (________________WD 5_______________)       (_________________WD 6___

Query      401 LLSRSLDGSLKVWDLRQIKKPLKEFDDLPNNYAQTNIAFSPDEQLFLTGTSVEKESQTGGLLCFYDRTKLELVSRVGIST 480 
WD40-rpts      _____________)(_______________________WD 7_______________________)   (__________

Query      481 TSVVQCAWHSKLNQIFATSGDKSQGGTHILYDPTLSERGALVCVARAPRKKSVDDFEAKPVIHNPHALPLFRDAPSRKRQ 560 
WD40-rpts      _______WD 8________________)________________WD 9_________________)              

Query      561 REKILKDPLKSHKPELPITGPGFGGRVGVTQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADVAAKDPKFIAPAYSHT 640 
WD40-rpts                                                                                      

Query      641 QPEPVFAKSDSEEEDK 656 
WD40-rpts

9 WD40-repeats found in QUERY=CmaCh02G017140 (Len=656):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    55-93       6.27  373.50  0.00058       17.5%     40.60
  WD 2:  Seg  5   173-218      8.76  476.32  2.4e-05       32.5%     53.21
  WD 3:  Seg  9   229-265      6.57  385.95  0.00039       22.5%     53.02
  WD 4:  Seg 14   276-320      8.64  471.53  2.7e-05       37.5%     47.95
  WD 5:  Seg 19   332-368      7.90  441.18  7.0e-05       25.0%     45.01
  WD 6:  Seg 22   376-414      9.42  503.58  1.0e-05       37.5%     52.58
  WD 7:  Seg 26   415-466      5.39  337.25  0.00177       22.5%     45.43
  WD 8:  Seg 30   470-508      6.35  376.84  0.00052       12.5%     48.36
  WD 9:  Seg 33   507-546      5.17  328.40  0.00233       12.5%     21.63

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -N------G----LPSISS-----SSKAWLDSLRTSKNPN-THVSGDS-------EPSKITRD
   WD 2  173-218    ENRYRIPQS----NEIVLK-----GHTKVVSALAVDHTGS-RVLSGSY-------DYTVRMYD
   WD 3  229-265    -F------R----QLEPFE-----GHQ--IRNLSWSPSAD-RFLCVTG-------SAQAKIYD
   WD 4  276-320    KG------DMYIRDLKNTK-----GHISGLTCGEWHPKNKETILTSSE-------DGSLRIWD
   WD 5  332-368    -------------KPKLAR-----PGRIPVTTCAWDREGK-SIVGGMG-------DGSIQIWN
   WD 6  376-414    -R------P----DIHVEN-----SHSDDITALKFSSDGT-ILLSRSL-------DGSLKVWD
   WD 7  415-466    LR------Q----IKKPLKEFDDLPNNYAQTNIAFSPDEQ-LFLTGTSVEKESQTGGLLCFYD
   WD 8  470-508    -L------E----LVSRVG-----ISTTSVVQCAWHSKLN-QIFATSG-------DKSQGGTH
   WD 9  507-546    TH------I----LYDPTL-----SERGALVCVARAPRKK-SVDDFEA-------KPVIHNPH

   WD40 Template    TG------E----CLRTLS-----GHTSGVTSVSFSPDGK-RLVSGSE-------DGTIKVWD