WDRR: WD40 Repeat Recognition
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| JobID: HXER81659520223 Submitted: 2022-08-03 17:50:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79730991 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G053120 (Len=448) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G053120, Len=448): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVMLLLPVKPSVTSRKNSKIYWHLNQCCAMQFWKYRGTDTMGDSALQEMPINVDTLEGQRESSVLLTGNISGSLSFFGVG 80
WD40-rpts (______________WD 1______________)(___________________WD 2___________________)
Query 81 GGDQHIGHPVNCCPELVWPSARENQMFGEVPGDIWQLSGASLQMSSNISCIKLFKKRFPSVHDEVSDIQHALISTLGSDV 160
WD40-rpts (___________________WD 3___________________)(_________________WD 4___
Query 161 SGGSVYILNLVEPLDFNRTIPVIRRRIHEVASFDCSIWTADCQSSGGRAVIGTNIGAASVDMGTGRISWILHGKSDIFAL 240
WD40-rpts ______________) (_________________WD 5________________)(_________________
Query 241 QLIHSENVVLCGLRNGMIVTIDTRERQEVGKRLLRHRIPYLPIDRRNSRTSSQQWYKLTGNIFPSCTVKMPSSISSLMSL 320
WD40-rpts WD 6_________________)(________________WD 7________________)(_________________WD
Query 321 QFDDRYFLASSMDGSVKLYDHRLIQRGAVQTYDGHENSHTRVQLGVDPTETFVTSGGEDCKFRLWNIKSGKLIFEDKFGD 400
WD40-rpts 8_________________) (__________________WD 9_________________) (__________
Query 401 AVPSTICWRRAGGRFPRGLDGYLGCEDHSSGAWLGSQAGIHYVSWPRT 448
WD40-rpts ______WD10________________)
 10 WD40-repeats found in QUERY=CsaV3_6G053120 (Len=448): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-34 4.49 299.99 0.00563 12.5% 27.84 WD 2: Seg 4 35-78 5.15 327.21 0.00242 12.5% 40.15 WD 3: Seg 9 92-135 4.88 316.06 0.00342 17.5% 8.93 WD 4: Seg 13 136-175 3.14 244.46 0.03116 7.5% 20.27 WD 5: Seg 16 184-222 5.73 351.28 0.00115 15.0% 47.01 WD 6: Seg 20 223-262 7.37 419.13 0.00014 12.5% 55.24 WD 7: Seg 24 263-300 4.50 300.42 0.00555 20.0% 9.74 WD 8: Seg 27 301-340 7.09 407.50 0.00020 22.5% 52.92 WD 9: Seg 31 346-386 7.92 441.82 6.9e-05 27.5% 52.66 WD10: Seg 35 390-427 5.43 339.01 0.00168 15.0% 41.68Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-34 MVMLL----LPV------KPSVTS--RKNSKI----YWHLNQCCAMQFWK WD 2 35-78 YRGTD----TMGDSALQEMPINVD--TLEGQRESSVLLTGNISGSLSFFG WD 3 92-135 CCPELVWPSARENQMFGEVPGDIW--QLSGAS----LQMSSNISCIKLFK WD 4 136-175 KRFPS----VHDEVSDIQHALIST--LGSDVS----GGSVYILNLVEPLD WD 5 184-222 -RRRI----HEVASFDCSIWTADC--QSSGGR----AVIGTNIGAASVDM WD 6 223-262 GTGRI----SWILHGKSDIFALQL--IHSENV----VLCGLRNGMIVTID WD 7 263-300 TRE------RQEVGKRLLRHRIPY--LPIDRR----NSRTSSQQWYKLTG WD 8 301-340 NIFPS----CTVKMPSSISSLMSL--QFDDRY----FLASSMDGSVKLYD WD 9 346-386 -RGAV----QTYDGHENSHTRVQLGVDPTETF----VTSGGEDCKFRLWN WD10 390-427 -GKLI----FEDKFGDA-VPSTIC--WRRAGG----RFPRGLDGYLGCED WD40 Template TGECL----RTLSGHTSGVTSVSF--SPDGKR----LVSGSEDGTIKVWD |
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