Input parameters:

  Query = gi_51012699_gb_AAT92643.1_ERE1-YBR246W (Len=387)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_51012699_gb_AAT92643.1_ERE1-YBR246W, Len=387):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSIQESDVLNAVKTKLPPCCLRIFRNKIILVGTYDLDKSTGYRSGSLDVFTMDLKLLCSNNTYGAILDLKLSPFDDTLI 80  
WD40-rpts                                                          (__________________WD 1_____

Query       81 CTAHSTGNIMLWRIRCTDKDDFQSNELDIHAIANLQLFEKDVLIASCHFSPLDCKKLLVTNTAGEAATIDIRTLSVQFTA 160 
WD40-rpts      ____________)                                                                   

Query      161 SAIAQAYSKLDKIDYEVQGATEKVIHVESGQFLKPHELECWTAEFGSLQPFQDVVFTGGDDSRIMAHDLRSKEFIWSNNR 240 
WD40-rpts                                  (_________________WD 2_________________)(___________

Query      241 IHDAGVVSIKCSQPNFRNNKPTSIITGSYDDNIRSLDLRMMGESIFPGANVPTVNKLACDLGGGVWRFVESPIDQEQSHH 320 
WD40-rpts      ___________WD 3_____________________)                        (_________________W

Query      321 NGSDRLLVCCMYNGAKVVTMNDNSDEYFQIQHYLKKGHDSMCYGGDWSNSLIATCSFYDNSLQTWIV 387 
WD40-rpts      D 4________________) (____________________WD 5___________________) 

5 WD40-repeats found in QUERY=gi_51012699_gb_AAT92643.1_ERE1-YBR246W (Len=387):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    53-93       6.94  401.29  0.00024       17.5%     57.83
  WD 2:  Seg 16   189-228      6.79  395.21  0.00029       20.0%     33.07
  WD 3:  Seg 20   229-277      6.31  375.20  0.00055       25.0%     52.69
  WD 4:  Seg 25   302-340      3.14  244.18  0.03143       12.5%     39.53
  WD 5:  Seg 28   342-386      3.42  255.74  0.02205       17.5%     45.92

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   53-93     MDL------KLLCSNNTYGAILDLKLSP-----FDDTLICTAH-STGNIMLWR
   WD 2  189-228    SGQ------FLKPHELECWTAEFGSLQP------FQDVVFTGG-DDSRIMAHD
   WD 3  229-277    LRS---KEFIWSNNRIHDAGVVSIKCSQPNFRNNKPTSIITGS-YDDNIRSLD
   WD 4  302-340    -GG------GVWRFVESPIDQEQSHHNG------SDRLLVCCM-YNGAKVVTM
   WD 5  342-386    DNSDEYFQIQHYLKKGHDSMCYGGDWS--------NSLIATCSFYDNSLQTWI

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP------DGKRLVSGS-EDGTIKVWD