Input parameters:

  Query = CmaCh01G014150 (Len=478)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G014150, Len=478):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSARSCVISSQFHFRRRYLHFLEFSTRFLNIPRSMENFGNDFLDYLVDDYYDVADFDNGETQSSDVESLDSDFEDDFEMR 80  
WD40-rpts                                                                                      

Query       81 KSRTDTSALEARNGKDIQGIPWERLHFTREKCRETRLKQYRNYESLSRPRQDLEKECLQVEMGNSFFDFQFNTRLVKSTI 160 
WD40-rpts                                                                                      

Query      161 VHFQLRNLLWATSKHDVYLMQNYSVLHWSSLLRRSKEVLNVSKPVVPTLKLPGLRSQSLSRVQISTMAVKENLIVAGGFQ 240 
WD40-rpts                                                      (_________________WD 1__________

Query      241 GELICKYLNHPQVAFCTKITASENAITNAVDIYQDSVGKIRVMTANNDAKVRIFDAENFASLGCFSFDWSVNNTSVSPDG 320 
WD40-rpts      ______)      (__________________WD 2__________________)(__________________WD 3__

Query      321 KLLAVLGDNPDCLITDANSGRTIGSLRGHLDYSFTSAWHPNGHILATGNQDTSCRLWDVRKMSEPMTVLKGRMGAIRAVK 400 
WD40-rpts      _______________)   (_________________WD 4________________)    (_________________

Query      401 FSSDGRFMAMAEPADFVHIFDTESGWVEGQEIDMFGEIAGISFSPDSESLFVGVSDRTYGSLLEFNRKRHNRYLDSMI 478 
WD40-rpts      WD 5________________)   (_________________WD 6_________________)              

6 WD40-repeats found in QUERY=CmaCh01G014150 (Len=478):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   209-247      6.58  386.49  0.00038       15.0%     43.56
  WD 2:  Seg 12   254-295      6.85  397.64  0.00027       15.0%     51.23
  WD 3:  Seg 16   296-336      7.51  424.78  0.00012       22.5%     57.14
  WD 4:  Seg 20   340-378      9.95  525.75  5.1e-06       27.5%     52.85
  WD 5:  Seg 24   383-421      9.06  488.80  1.6e-05       22.5%     57.13
  WD 6:  Seg 28   425-464      7.57  427.46  0.00011       25.0%     55.39

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  209-247    -LK-LPGLRSQSLSRVQISTMAVKEN---LIVAGGFQGEL-ICKY
   WD 2  254-295    -AF-CTKITASENAITNAVDIYQDSVGKIRVMTANNDAKV-RIFD
   WD 3  296-336    AENFASLGCFSFDWSVNNTSVSPDGK---LLAVLGDNPDC-LITD
   WD 4  340-378    -GR-TIGSLRGHLDYSFTSAWHPNGH---ILATGNQDTSC-RLWD
   WD 5  383-421    -SE-PMTVLKGRMGAIRAVKFSSDGR---FMAMAEPADFV-HIFD
   WD 6  425-464    -GW-VEGQEIDMFGEIAGISFSPDSE---SLFVGVSDRTYGSLLE

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGK---RLVSGSEDGTI-KVWD