WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

JobID: HI9LO1450336451    Submitted: 2015-12-17 15:14:11

You can bookmark this page for further accessing the result in the future.
Results on this server will be retained for 30 days.

Job status:  [Done] Total run time: 288916126 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = sp_O49316_FB122_ARATH (Len=379)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_O49316_FB122_ARATH, Len=379):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRDDNGWSKLYPDLLRSIFESLSCLDFHRAGTVCSNWYAVSRSCPLYPWRIVFRGKNSVLFDPIQDKIYTKNLLGIDLS 80  
WD40-rpts                                                                                      

Query       81 KIHCLASYGNWILIVDPRLDFYLLNVFTRETINLPSLESSLRGDRPFRFIRNDDESGYFLELYGTKFLLTWNDFRFEKTA 160 
WD40-rpts                                                                                      

Query      161 ILWVNGRNGDYVVAWAIKQFYIFSYKKIGNDDDDKRWSITCTQCEDMAYKDNKLYVYTFDHYINILDFSGNSPKEPMEEN 240 
WD40-rpts                                                                                      

Query      241 PYLSHPFSFVDAIYKLRLAVTREGKVLIVLSLVGLDKKICIYKLNLKIGDWEIVESLGDEMLIFGHGVTIRAPDKDISGG 320 
WD40-rpts                                                                                      

Query      321 GLKSDSICFLYDDYLSDHYLTMKRQPICGVFDLATSTITWHTRLEDLSSKICWFVPGCA 379 
WD40-rpts                                                                 



No WD40-repeats found in QUERY=sp_O49316_FB122_ARATH (Len=379)!

Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019