Input parameters:

  Query = CsaV3_5G035020 (Len=552)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G035020, Len=552):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNAPIIDPLQGDFPEVIEEFLEHGVMKCIAFNRRGTLLAAGCSDGNCVIWDFETRGIAKELKDKDCVSAITSVCWSKYGH 80  
WD40-rpts                 (_________________WD 1_________________)   (__________________WD 2___

Query       81 QILVSAADRSLTLWDVPKGEKINRITLQQTPLQARLHPGLSQPSLCLACPLSSAPMIVDLKTGSTTLLPVCISDTDTASA 160 
WD40-rpts      ______________)   (__________________WD 3_________________)             (_______

Query      161 RGKVSDGTPPFTPTAACFNKYGNLVYVGNSKGEILIIDYERIQIEAMVPISGGAVVKNIVFSRNGQYLLTNSNDRTIRIY 240 
WD40-rpts      _____________WD 4____________________)(___________________WD 5__________________

Query      241 ENLLPNKDGLKVIDEITKEFDGLDGAEKLKAVGTKCLTLFREFQDSITRMHWKAPCFSGDGEWVVGGSASKGEHKIYIWD 320 
WD40-rpts      )                              (______________________WD 6_____________________)

Query      321 RAGYLVKILEGPKEALIDLGWHPVHPIVVSVSLTGLIYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLNPETEKV 400 
WD40-rpts        (_________________WD 7________________)          (___________________WD 8_____

Query      401 KEPDVNEDEEVDIITVEKDSAFSDSDASQDELCFLPSIPCPDVIDQQDKCVEISSKMIDNNNSGSPLSEEAGVNGRTTNH 480 
WD40-rpts      ______________)                                     (_________________WD 9______

Query      481 ASSPMEVLDNTDDAGGARMKRKRKPSEKGLELQAEKVKKPSKPSSRLSKFKTKSMVHQDNSNGTYGDDNSDE 552 
WD40-rpts      ___________)                                                            

9 WD40-repeats found in QUERY=CsaV3_5G035020 (Len=552):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-51       7.45  422.34  0.00013       20.0%     54.65
  WD 2:  Seg  5    55-95       7.90  441.08  7.1e-05       25.0%     57.70
  WD 3:  Seg  9    99-139      5.81  354.83  0.00103        7.5%     50.73
  WD 4:  Seg 14   153-198      6.39  378.45  0.00049       20.0%     47.20
  WD 5:  Seg 17   199-241      7.74  434.35  8.7e-05       22.5%     58.24
  WD 6:  Seg 23   272-320      5.90  358.47  0.00092       35.0%     46.35
  WD 7:  Seg 27   323-361      9.01  487.02  1.7e-05       25.0%     57.38
  WD 8:  Seg 32   372-415      4.37  295.34  0.00650        5.0%     22.77
  WD 9:  Seg 39   453-492      4.20  288.20  0.00811       10.0%      6.25

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-51     DFP---EVIEE------FL------E--HGVMKCI--AFNRRGTLLAAGCS---DG-NCVIWD
   WD 2   55-95     -RG---IAKEL------KD------KDCVSAITSV--CWSKYGHQILVSAA---DR-SLTLWD
   WD 3   99-139    -GE---KINRI------TL------Q--QTPLQARLHPGLSQPSLCLACPL---SS-APMIVD
   WD 4  153-198    SDT---DTASA------RGKVSDGTP--PFTPTAA--CFNKYGNLVYVGNS---KG-EILIID
   WD 5  199-241    YERIQIEAMVP------IS------G--GAVVKNI--VFSRNGQYLLTNSN---DR-TIRIYE
   WD 6  272-320    VGT---KCLTLFREFQDSI------T--RMHWKAP--CFSGDGEWVVGGSASKGEH-KIYIWD
   WD 7  323-361    -GY---LVKIL------EG------P--KEALIDL--GWHPVHPIVVSVSL---TG-LIYIWA
   WD 8  372-415    APD---FKELE------EN--EEYVE--REDEFDL--NPETEKVKEPDVNE---DE-EVDIIT
   WD 9  453-492    ISS---KM-ID------NN------N--SGSPLSE--EAGVNGRTTNHASS---PMEVLDNTD

   WD40 Template    TGE---CLRTL------SG------H--TSGVTSV--SFSPDGKRLVSGSE---DG-TIKVWD