WDRR: WD40 Repeat Recognition
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| JobID: HA4T31659519207 Submitted: 2022-08-03 17:33:27 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79730481 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G021810 (Len=480) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G021810, Len=480): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNSCYRGMNSDFAEICNRQIGIVPSTNFSRRFIASEIIVKQLNLEHKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWD 80
WD40-rpts (_______________WD 1_______________) (_________________WD 2________________)
Query 81 WARNSKRFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVRLGQVLGDGRVITQMLGEHQGSVHELAVEPGSPHIFYSC 160
WD40-rpts (__________________WD 3_________________) (_________________WD 4________
Query 161 GEDGLVQHFDLRNTSARKLFYCTAFAERSRHPPNSIELNAIAIDPRNPNFFALGGSDEYARLYDLRNCRGDVTSSNRVVD 240
WD40-rpts _________) (__________________WD 5_________________)
Query 241 TFCPHHLTQTNNFHITGLVFSNSSELLITYSDELIYLFQKNMGLGPSPLTVSSENLLRELKRPHVFSGHRNSATVKGVNF 320
WD40-rpts (________________WD 6_______________) (__________________WD
Query 321 FGPNAEYIVSGSDCGHIYIWKKKGALLVKLMLGDHDVVNHIEPHPHLPILATCGIENNVKIWTPMASDVPPLPDDMEQIM 400
WD40-rpts 7__________________) (_________________WD 8________________) (
Query 401 ESNKQGREEHSRVTLTPDVIVHVLRLQRRQTSAFTERRYNPADNNSDGENEWEAYNQEALDGSVSFEDDSTEHASECNIS 480
WD40-rpts _______________WD 9_______________) (______________WD10_____________)
 10 WD40-repeats found in QUERY=CsaV3_6G021810 (Len=480): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-36 4.95 319.19 0.00310 10.0% 21.06 WD 2: Seg 3 42-80 9.67 513.92 7.4e-06 37.5% 55.70 WD 3: Seg 7 85-125 7.47 423.27 0.00012 20.0% 52.16 WD 4: Seg 11 131-170 7.00 404.01 0.00022 22.5% 51.57 WD 5: Seg 16 184-224 7.94 442.71 6.7e-05 10.0% 44.06 WD 6: Seg 20 243-279 6.47 381.77 0.00045 17.5% 43.24 WD 7: Seg 23 300-341 7.28 415.43 0.00016 32.5% 48.00 WD 8: Seg 27 345-383 8.51 466.13 3.2e-05 15.0% 57.29 WD 9: Seg 31 400-435 4.56 302.87 0.00515 10.0% 39.59 WD10: Seg 33 448-480 3.26 249.50 0.02671 20.0% 40.43Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-36 ---MNSCYRGMNSDFAEIC---NRQ--IG-I-VPSTNFSRRFIASE WD 2 42-80 -LNLEHKLNGHDGCVNAVE---FNS--TGDL-LVSGSDDCKVILWD WD 3 85-125 -SKRFSYPSGHLDNIFQTK---IMPFTDDQK-IVTSAADGKVRLGQ WD 4 131-170 -RVITQMLGEHQGSVHELA---VEP--GSPHIFYSCGEDGLVQHFD WD 5 184-224 AFAERSRHPPNSIELNAIA---IDP-RNPNF-FALGGSDEYARLYD WD 6 243-279 CPH--HLTQTNNFHITGLV---FSN--SSEL-LITYS-DELIYLFQ WD 7 300-341 -LKRPHVFSGHRNSATVKGVNFFGP--NAEY-IVSGSDCGHIYIWK WD 8 345-383 -ALLVKLMLGDHDVVNHIE---PHP--HLPI-LATCGIENNVKIWT WD 9 400-435 ----MESNKQGREEHSRVT---LTP--DVIV-HVLRLQRRQTSAFT WD10 448-480 -GENEWEAYNQEALDGSVS---FED--DSTE-HASECNIS------ WD40 Template TGECLRTLSGHTSGVTSVS---FSP--DGKR-LVSGSEDGTIKVWD |
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