Input parameters:

  Query = DDB2 (Len=427)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (DDB2, Len=427):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGR 80  
WD40-rpts                (_________________WD 1_________________)   (___________________WD 2___

Query       81 ASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT 160 
WD40-rpts      ________________)   (_________________WD 3_________________)(___________________

Query      161 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM 240 
WD40-rpts      _WD 4___________________)   (__________________WD 5_________________)  (________

Query      241 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 320 
WD40-rpts      _________WD 6_________________)(____________________WD 7___________________)    

Query      321 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF 400 
WD40-rpts            (______________________WD 8______________________)(___________________WD 9

Query      401 NPMGDTLASAMGYHILIWSQEEARTRK 427 
WD40-rpts      __________________)        

9 WD40-repeats found in QUERY=DDB2 (Len=427):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-50       6.02  363.49  0.00079        7.5%     11.93
  WD 2:  Seg  3    54-97       5.16  327.90  0.00237       12.5%     26.77
  WD 3:  Seg  5   101-140      7.78  436.24  8.2e-05       22.5%     58.83
  WD 4:  Seg  9   141-185      7.47  423.20  0.00012       22.5%     57.40
  WD 5:  Seg 13   189-229      6.70  391.58  0.00033       17.5%     57.09
  WD 6:  Seg 17   232-271      8.58  468.96  3.0e-05       37.5%     57.12
  WD 7:  Seg 21   272-316      8.49  465.42  3.3e-05       27.5%     52.14
  WD 8:  Seg 26   327-376      4.87  315.95  0.00343       20.0%     51.13
  WD 9:  Seg 30   377-419      5.54  343.68  0.00145       25.0%     52.43

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-50     KT---------S-----EI--VLRPRNKRS--RSPL-ELEP-EAK-KLC-AKGSGP--SRRCDS
   WD 2   54-97     WV---------G-----LAGPQILPPCRSI--VRTL-HQHK-LGR-ASW-PSVQQGLQQSFLHT
   WD 3  101-140    -Y---------R-----IL--QKAAPFDRR--ATSL-AWHPTHPS-TVA-VGSKGG--DIMLWN
   WD 4  141-185    FG-----IKDKP-----TF--IKGIGAGGS--ITGL-KFNPLNTN-QFY-ASSMEG--TTRLQD
   WD 5  189-229    -N---------I-----LR--VFASSDTINIWFCSL-DVSA-SSR-MVV-TGDNVG--NVILLN
   WD 6  232-271    -G---------K-----EL--WNLRMHKKK--VTHV-ALNP-CCDWFLA-TASVDQ--TVKIWD
   WD 7  272-316    LR---------QVRGKASF--LYSLPHRHP--VNAA-CFSP-DGA-RLL-TTDQKS--EIRVYS
   WD 8  327-376    IPHPHRHFQHLT-----PI--KAAWHPRYN--LIVV-GRYP-DPN-FKSCTPYELR--TIDVFD
   WD 9  377-419    GN---------S--GKMMC--QLYDPESSG--ISSLNEFNP-MGD-TLA-SAM-GY--HILIWS

   WD40 Template    TG---------E-----CL--RTLSGHTSG--VTSV-SFSP-DGK-RLV-SGSEDG--TIKVWD