Input parameters:

  Query = CsaV3_3G028500 (Len=522)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G028500, Len=522):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESSSVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIFSGNWYGCIDTINGIKGLTDD 80  
WD40-rpts                                                                                      

Query       81 VRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFSKDKIHKLAYSIFTSKDMNLDYSNDNVIHELRKKLLRDLEK 160 
WD40-rpts                                                                                      

Query      161 TLPPPTCLPDRRLEQLVETTVMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVLTEHKNEVWFVQFSNNGEYLASS 240 
WD40-rpts                                                         (_________________WD 1_______

Query      241 SSDCSAIIWKVLEDGKLTLRHILRSHQSQVSFVAWSPDDAKLLTCGHAEVLKLWDVETGTCKHTFEDHGFIVSSCAWFPD 320 
WD40-rpts      _________)(____________________WD 2___________________)   (__________________WD 

Query      321 SMRLVCGSADPEMGIHLWDCEGNEIKAWRGSRMPKILDLAVTPDGKNLISIFLDKEIRILNLESNAERIISEGHTISSLS 400 
WD40-rpts      3_________________)   (_________________WD 4________________)(_________________W

Query      401 ISGDGKFFIVNLNNQEIHMWDVAGEWQQPLKYTGHQQNKYVIRSCFGGVNSAFIASGSENSEVYIWSRHSSKPIEVLSGH 480 
WD40-rpts      D 5_________________)    (__________________WD 6__________________)   (_________

Query      481 STTVNCVSWNPKRPKMLASASDDQTIRIWGPTSSKNVKPGQS 522 
WD40-rpts      ________WD 7_________________)            

7 WD40-repeats found in QUERY=CsaV3_3G028500 (Len=522):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   212-250      9.24  496.51  1.3e-05       32.5%     54.62
  WD 2:  Seg  7   251-295      8.92  483.12  1.9e-05       32.5%     54.01
  WD 3:  Seg 11   299-339      8.61  470.13  2.9e-05       42.5%     57.70
  WD 4:  Seg 15   343-381      8.34  459.05  4.0e-05       22.5%     59.51
  WD 5:  Seg 19   382-421      7.45  422.23  0.00013       22.5%     51.73
  WD 6:  Seg 23   426-467      6.78  394.92  0.00030       20.0%     56.18
  WD 7:  Seg 27   471-510      8.74  475.87  2.4e-05       40.0%     54.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  212-250    -TE-----TIQVLTEHKNE---VWFVQFSNN-GEYLASSSSDCS--AIIWK
   WD 2  251-295    VLEDGKLTLRHILRSHQSQ---VSFVAWSPD-DAKLLTCGHAEV--LKLWD
   WD 3  299-339    -GT-----CKHTFEDHGFI---VSSCAWFPD-SMRLVCGSADPEMGIHLWD
   WD 4  343-381    -NE-----IKAWRGSRMPK---ILDLAVTPD-GKNLISIFLDKE--IRILN
   WD 5  382-421    LES-----NAERIISEGHT---ISSLSISGD-GKFFIVNLNNQE--IHMWD
   WD 6  426-467    -WQ-----QPLKYTGHQQNKYVIRSCFGGVN-SAFIASGSENSE--VYIWS
   WD 7  471-510    -SK-----PIEVLSGHSTT---VNCVSWNPKRPKMLASASDDQT--IRIWG

   WD40 Template    TGE-----CLRTLSGHTSG---VTSVSFSPD-GKRLVSGSEDGT--IKVWD