Input parameters:

  Query = tr_B6K8C2_B6K8C2_SCHJY (Len=314)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (tr_B6K8C2_B6K8C2_SCHJY, Len=314):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKTIILWNLTRDDVNYGVAQRRLTGHNHFVSDCSLSYDSRYALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 ASWDKTIRLWDLEEGVCTHQFVGHTSDVLSVSFSPDNRQVVSGSRDKTIKIWNIIGNCKYTITEGGHSDWVSCVRFSPNP 160 
WD40-rpts      __________)   (_________________WD 3________________)    (__________________WD 4

Query      161 DNVTFVSAGWDKVVKVWDLESFALRTTHHGHTGYINAVTISPDGSLCASGGKDGVLMLWDLNENKHLYSLEAKTNINAVV 240 
WD40-rpts      _________________)   (_________________WD 5________________)   (________________

Query      241 FSPNRYWLCAATGSSIRIFDLESQEKVDELTVDFVGVGKKSAEPECISLAWSADGQTLFSGWTDNLIRVWQVTK 314 
WD40-rpts      WD 6_______________)   (_____________________WD 7_____________________)   

7 WD40-repeats found in QUERY=tr_B6K8C2_B6K8C2_SCHJY (Len=314):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.96  484.91  1.8e-05       42.5%     55.37
  WD 2:  Seg  5    53-91       9.80  519.38  6.2e-06       40.0%     56.57
  WD 3:  Seg  9    95-133     11.35  583.59  8.5e-07       57.5%     56.52
  WD 4:  Seg 13   138-178      8.32  458.23  4.1e-05       40.0%     54.93
  WD 5:  Seg 17   182-220     10.18  535.02  3.8e-06       37.5%     55.78
  WD 6:  Seg 21   224-260      5.99  362.01  0.00082       25.0%     51.77
  WD 7:  Seg 25   264-311      7.57  427.29  0.00011       32.5%     57.59

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     QLVLRATLE---------GHSGWVTSLSTAP--ENPDILLSGSRDKTIILWN
   WD 2   53-91     -GVAQRRLT---------GHNHFVSDCSLSY--DS-RYALSASWDKTIRLWD
   WD 3   95-133    -GVCTHQFV---------GHTSDVLSVSFSP--DN-RQVVSGSRDKTIKIWN
   WD 4  138-178    -CKYTITEG---------GHSDWVSCVRFSPNPDN-VTFVSAGWDKVVKVWD
   WD 5  182-220    -FALRTTHH---------GHTGYINAVTISP--DG-SLCASGGKDGVLMLWD
   WD 6  224-260    -NKHLYSLE---------AKTN-INAVVFSP--NR-YWLCAAT-GSSIRIFD
   WD 7  264-311    -QEKVDELTVDFVGVGKKSAEPECISLAWSA--DG-QTLFSGWTDNLIRVWQ

   WD40 Template    TGECLRTLS---------GHTSGVTSVSFSP--DG-KRLVSGSEDGTIKVWD