Input parameters:

  Query = CmaCh18G008000 (Len=672)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G008000, Len=672):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEASEKAEFQESAAAKIRQITAELATTTAGRIHELYGQLAKGQSPKSLVFACSDSRVYPSHILNFQPGEAFVVRNIANM 80  
WD40-rpts                                                                                      

Query       81 VPPFDKLWGIIFMDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANRTLSKPIDPTQHLV 160 
WD40-rpts                                                                                      

Query      161 AFNPTYDQLWAPILGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYNTFHKYGYAADPSASAGNNFIGDMEALQK 240 
WD40-rpts                                                                                      

Query      241 NDAISVYNIPQHEQKKRKIEKKKEMSESEDVEMDLNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYA 320 
WD40-rpts                                                                                      

Query      321 KKKGEEKGGEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILS 400 
WD40-rpts                                                         (_________________WD 1_______

Query      401 AGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDD 480 
WD40-rpts      __________)    (_________________WD 2________________)   (__________________WD 3

Query      481 KQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPS 560 
WD40-rpts      _________________)   (_________________WD 4________________)(___________________

Query      561 ISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTL 640 
WD40-rpts      WD 5__________________)      (__________________WD 6_________________)   (______

Query      641 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 672 
WD40-rpts      ___________WD 7________________)

7 WD40-repeats found in QUERY=CmaCh18G008000 (Len=672):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   372-411      8.10  449.40  5.5e-05       37.5%     56.92
  WD 2:  Seg 13   416-454     10.46  546.80  2.7e-06       40.0%     57.46
  WD 3:  Seg 17   458-498      6.35  376.92  0.00052       30.0%     52.02
  WD 4:  Seg 21   502-540      9.66  513.57  7.4e-06       25.0%     57.37
  WD 5:  Seg 25   541-583      7.42  421.37  0.00013       22.5%     48.94
  WD 6:  Seg 28   590-630      7.21  412.30  0.00017       32.5%     47.74
  WD 7:  Seg 32   634-672      5.73  351.34  0.00115       25.0%     51.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  372-411    -K---RLVHTWS-GHTKG--VSAIRFFP-KHGHL-ILSAGMDTKVKIWD
   WD 2  416-454    -G---KCMRTYM-GHSQA--VRDISFCN-D-GSK-FLTAGYDKKIKYWD
   WD 3  458-498    -G---QVISTFSTGKIPY--VVKLNPDD-D-KQNILLAGMSDKKIVQWD
   WD 4  502-540    -G---QITQEYD-QHLGA--VNTITFVD-N-NRR-FVTSSDDKSLRVWE
   WD 5  541-583    YGIPVVIKYISE-PHMHS--MPSISVHP-N-TNW-LAAQSLDNQILIYS
   WD 6  590-630    -L---NKKKRFA-GHIVAGYACQVNFSP-D-GRF-VMSGDGEGKCWFWD
   WD 7  634-672    -C---KVFRTLK-CHEGV--CIGCEWHPLE-QSK-VATCGWDGLIKYW-

   WD40 Template    TG---ECLRTLS-GHTSG--VTSVSFSP-D-GKR-LVSGSEDGTIKVWD