Input parameters:

  Query = CmaCh07G001850 (Len=316)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh07G001850, Len=316):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVFKTPFNGYSVKFSPFYESRIAVATAQNFGILGNGRLHVLDLNPAGPISEHIAFDTADGVYDVSWSESHDSLLVAAVA 80  
WD40-rpts                                                 (____________________WD 1____________

Query       81 DGSVKLYDLALPPTSNPIRSFHEHTREVHSADYNPVRRDSFLTSSWDDTSKLWTLDRPTSVRTFKEHAYCVYSSVWNPRH 160 
WD40-rpts      _______)      (_________________WD 2_________________)   (_________________WD 3_

Query      161 GDVFASASGDCTVRIWDVREPASTMIIPAHDFEVLSCDWNKYDDCCIATASVDKSIRVWDVRSYRTPVSVLNGHGYAVRK 240 
WD40-rpts      ________________)   (_________________WD 4_________________)(___________________

Query      241 VKFSPHRQGLLASCSYDMTVCLWDYMMEDALVGRYDHHTEFAVGIDMSVLVEGLLASTGWDEHVFVWQHGTDPRAP 316 
WD40-rpts      WD 5___________________)    (_________________WD 6_________________)        

6 WD40-repeats found in QUERY=CmaCh07G001850 (Len=316):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    44-88       7.06  406.47  0.00021       27.5%     55.91
  WD 2:  Seg  8    95-134      8.06  447.44  5.8e-05       27.5%     52.93
  WD 3:  Seg 12   138-177      8.55  467.91  3.1e-05       32.5%     56.55
  WD 4:  Seg 16   181-220      8.04  446.96  5.9e-05       25.0%     53.51
  WD 5:  Seg 20   221-264      8.13  450.66  5.2e-05       37.5%     54.76
  WD 6:  Seg 24   269-308      6.91  400.20  0.00025       20.0%     53.68

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   44-88     LNPAGPISEHIAFDTADGVYDVSWSE-SHDS-LLVAAVADGSVKLYD
   WD 2   95-134    -SN----PIRSFHEHTREVHSADYNPVR-RD-SFLTSSWDDTSKLWT
   WD 3  138-177    -PT----SVRTFKEHAYCVYSSVWNPRH-GD-VFASASGDCTVRIWD
   WD 4  181-220    -PA----STMIIPAHDFEVLSCDWNKYD-DC-CIATASVDKSIRVWD
   WD 5  221-264    VRS-YRTPVSVLNGHGYAVRKVKFSP-H-RQGLLASCSYDMTVCLWD
   WD 6  269-308    -DA----LVGRYDHHTEFAVGIDMSV-L-VEGLLASTGWDEHVFVWQ

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSP-D-GK-RLVSGSEDGTIKVWD