Input parameters:

  Query = CsaV3_1G031710 (Len=810)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G031710, Len=810):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MITGGKSYVSAPPAFSNDAKRLLVCTGTSVSIFSTSTGLQIASLKGHKAFVTSVTVVPASSAASKILCFCWTTSLDGTIR 80  
WD40-rpts       (______________WD 1_____________)   (____________________WD 2__________________

Query       81 YWDFSIPELMKTIDIRLPVYSMVIPSLLGQLLERDVKSRDLFAYVSVQNIGVKDGKPVPVRGQILKCNLTKSRLATGVIL 160 
WD40-rpts      __)   (_________________WD 3________________)                           (_______

Query      161 AETQQPEYLTTSSSGSFFGIRNKRKIHVWKVPNGQFEKLGAKKITLHHTKDLTVLAFHPTQRTVAAGDVTGRILIWRGFG 240 
WD40-rpts      _________WD 4________________)        (_________________WD 5________________)(__

Query      241 NRTFPVSGEEAGKKSFDSDEDRPGVRGNDDADSCSTRHWHPTEVIALSFSSDGAYLYSGGKEGVLVVWQLDTEKRKYLPR 320 
WD40-rpts      ___________WD 6____________)  (_________________WD 7________________)  (________

Query      321 IGSPLLYFTDSPDPLLASVSCADNQIHLLKMPSMEILKSISGIKLPCSFPDVCQGSNNGFAFNQNDGLVALRSENYSIQF 400 
WD40-rpts      _________WD 8________________)           (__________________WD 9________________

Query      401 YSLFDDCGICEVQICERNHQPGEELTVVITSVVLSLDGSLMTTAEIRIPEGGIGGLICLKFWDSELENKKFSLSTVVYEP 480 
WD40-rpts      _)             (_____________________WD10_____________________)(________________

Query      481 HRDAGISALAFHPNRRMVVSTSYGGDFKIWVCNGGLPKVQGEKNSSWMCHSVGSYKKKSMTAATFSADGSVLAVAAETVI 560 
WD40-rpts      _____WD11_____________________)               (________________WD12_____________

Query      561 TLWDPEQNILVAVIGETLTPIVNLSFAGDSQFLVSVSQGSKPQLSVWTVSKLSISWSYKLHIEALACAVDMSSFAVLALI 640 
WD40-rpts      ___)   (__________________WD13_________________)   (_________________WD14_______

Query      641 PESVRLQFSDSTFQGRDGMILHFNANDPVPLSTWSVRKAQGGGLAFLRSEKSNISSDEKSGHPWLVYINGDHEYTLFDPS 720 
WD40-rpts      _________)                                                  (_________________WD

Query      721 GKEGQELSLTKQGSYHALEETGGKFGYEAIYGELPEFVSKMDQTLSAPSVPSQRPWETIFSGSSHELPPLTKLCSAFLES 800 
WD40-rpts      15________________)                                                             

Query      801 LLERRTVTTE 810 
WD40-rpts                

15 WD40-repeats found in QUERY=CsaV3_1G031710 (Len=810):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-34       5.32  334.34  0.00194       17.5%     48.03
  WD 2:  Seg  4    38-83       7.95  443.17  6.6e-05       40.0%     49.69
  WD 3:  Seg  8    87-125      6.35  377.09  0.00052       15.0%     54.73
  WD 4:  Seg 13   153-190      5.44  339.36  0.00166       15.0%     50.08
  WD 5:  Seg 17   199-237      7.90  441.19  7.0e-05       22.5%     49.69
  WD 6:  Seg 21   238-268      5.31  334.05  0.00196       17.5%     38.26
  WD 7:  Seg 24   271-309      9.30  498.63  1.2e-05       35.0%     56.62
  WD 8:  Seg 28   312-350      7.18  411.32  0.00018       20.0%     54.83
  WD 9:  Seg 33   362-402      6.24  372.60  0.00059       10.0%     42.78
  WD10:  Seg 37   416-463      5.83  355.56  0.00101       25.0%     39.40
  WD11:  Seg 40   464-511      7.25  414.02  0.00016       25.0%     52.09
  WD12:  Seg 45   527-564      6.80  395.39  0.00029       27.5%     53.08
  WD13:  Seg 49   568-608      7.15  410.15  0.00018       22.5%     58.70
  WD14:  Seg 53   612-650      6.91  400.20  0.00025       10.0%     48.64
  WD15:  Seg 61   701-739      4.93  318.30  0.00319       12.5%     41.03

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-34     -------ITG--------GKSYVSAPPAFSNDAKRLL-------VCT-GT---------S--VSIFS
   WD 2   38-83     -GLQ-IASLK--------GHKAFVTSVTVVPASSAASKILCFCWTTSLDG---------T--IRYWD
   WD 3   87-125    -PEL-MKTID--------IRLPVYSMVIPSLLGQLLE-------RDVKSR---------D--LFAYV
   WD 4  153-190    -RLA-TGVIL--------AETQQPEYLTTSSSGSFFG-------IRN-KR---------K--IHVWK
   WD 5  199-237    -LGA-KKITL--------HHTKDLTVLAFHPTQRTVA-------AGDVTG---------R--ILIWR
   WD 6  238-268    ------------------GFGNRTFPVSGEEAGKKSF-------DSDEDR---------P--GVRGN
   WD 7  271-309    -ADS-CSTRH--------WHPTEVIALSFSSDGAYLY-------SGGKEG---------V--LVVWQ
   WD 8  312-350    -TEK-RKYLP--------RIGSPLLYFTDSPDPLLAS-------VSCADN---------Q--IHLLK
   WD 9  362-402    GIKLPCSFPD--------VCQGSNNGFAFNQNDGLVA-------LRSENY---------S--IQFYS
   WD10  416-463    -ERN-HQPGE--------ELTVVITSVVLSLDGSLMT-------TAEIRIPEGGIGGLIC--LKFWD
   WD11  464-511    SELE-NKKFSLSTVVYEPHRDAGISALAFHPNRRMVV-------STSYGG---------D--FKIWV
   WD12  527-564    -WMC-HSVGS--------YKKKSMTAATFSADGSVLA-------VAA-ET---------V--ITLWD
   WD13  568-608    -NIL-VAVIG--------ETLTPIVNLSFAGDSQFLV-------SVSQGS---------KPQLSVWT
   WD14  612-650    -LSI-SWSYK--------LHIEALACAVDMSSFAVLA-------LIPESV---------R--LQFSD
   WD15  701-739    -GHP-WLVYI--------NGDHEYTLFDPSGKEGQEL-------SLTKQG---------S--YHALE

   WD40 Template    TGEC-LRTLS--------GHTSGVTSVSFSPDGKRLV-------SGSEDG---------T--IKVWD