Input parameters:

  Query = CsaV3_1G011800 (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G011800, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSETESMLMEEEDENRSNPTGEATAETTMNDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPNNFFKGVKWSPDGSCFL 80  
WD40-rpts                                                           (_________________WD 1_____

Query       81 TSSEDNSLRIFNLPDYGDDVSVNVAAEEDSFTSNLVVGEGESVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGE 160 
WD40-rpts      ___________)                 (____________________WD 2____________________)   (_

Query      161 LRCTYRAYDAMDEITAAFSIAFNPAGTKIFAGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLA 240 
WD40-rpts      __________________WD 3__________________)           (_________________WD 4______

Query      241 LGSYSQTTGIYREDNMELLYVLHGQEGGITHIQFSKDGNYLYTGGRKDPYILCWDIRKSVDVVYKLYRSSENTNQRIFFD 320 
WD40-rpts      ___________)   (_________________WD 5_________________)       (_________________

Query      321 IEPCGQHLGTGGQDGFVHVYDLQTGQWVTSFQAAQDTVNGFSFHPYMPMTVTSSGHRRFIGPDNDDEDLCLSGDENCASL 400 
WD40-rpts      WD 6________________)   (_________________WD 7________________)                 

Query      401 WSFDCASLGNGDAINGN 417 
WD40-rpts                       

7 WD40-repeats found in QUERY=CsaV3_1G011800 (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    54-92       8.39  461.42  3.8e-05       25.0%     52.44
  WD 2:  Seg  7   110-155      6.05  364.45  0.00076       20.0%     53.17
  WD 3:  Seg 11   159-201      6.57  386.26  0.00039       22.5%     53.92
  WD 4:  Seg 15   213-252      7.13  409.16  0.00019       22.5%     52.73
  WD 5:  Seg 19   256-295      8.90  482.44  2.0e-05       40.0%     56.96
  WD 6:  Seg 23   303-341      8.53  466.84  3.2e-05       27.5%     55.71
  WD 7:  Seg 27   345-383      8.48  464.94  3.4e-05       20.0%     54.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-92     YNQFRTSPNP-----NNFFKGVKW-------SPDGS-CFLTSS-EDNSLRIFN
   WD 2  110-155    SFTSNLVVGE-----GESVYDFCWYPYMSASDPVTC-VFASTT-RDHPIHLWD
   WD 3  159-201    GELRCTYRAYDAMDEITAAFSIAF-------NPAGT-KIFAGY--NKLVRIFD
   WD 4  213-252    STLQGNKEGQ-----TGIISAIAF-------SPTHSGMLALGS-YSQTTGIYR
   WD 5  256-295    MELLYVLHGQ-----EGGITHIQF-------SKDGN-YLYTGGRKDPYILCWD
   WD 6  303-341    VYKLYRSSEN-----TNQRIFFDI-------EPCGQ-HLGTGG-QDGFVHVYD
   WD 7  345-383    GQWVTSFQAA-----QDTVNGFSF-------HPYMP-MTVTSS-GHRRFIGPD

   WD40 Template    GECLRTLSGH-----TSGVTSVSF-------SPDGK-RLVSGS-EDGTIKVWD