Input parameters:

  Query = sp_D2HWM5_RFWD3_AILME (Len=773)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_D2HWM5_RFWD3_AILME, Len=773):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQEAMEYNVDEQLEHRVAEQPVPAEVVSTQGGPPPLQPLPTEVVSSQGAPPLLQPAPAEGTSSQVGPHLLQPAAQLSVD 80  
WD40-rpts                                                                                      

Query       81 LTEEVELLGEDRVENINPGASEEHRQPSRVNRPIPVSSLDSMNSFISGLQRLHGMLEFLRPPSDHNVGPVRSRRRRGSAS 160 
WD40-rpts                                                                                      

Query      161 RRSRTVGSQRTDSARSRAPLDAYFQVSRTQPHLPSMSQDSETRNPVSEDLQVSSSSSSDSESSAEYEEVVVQAEDTRAVV 240 
WD40-rpts                                                                                      

Query      241 SEEQGGTAAEQEVTCVGGGETLPKQSPQKTNPLLPSVSKDDEEGDTCTICFEHWTNAGDHRLSALRCGHLFGYKCISKWL 320 
WD40-rpts                                                                                      

Query      321 KGQARKCPQCNKKAKHSDIVVLYARTLRALDTSEHERMKSSLLKEQMLRKQAELESAQCRLQLQVLTDECSKLHSRVQDL 400 
WD40-rpts                                                                                      

Query      401 QKLTVQHRDQISQSPSGSQARSLNCLPSSQNQRKYHFQKTFTVSPTGNCRIMTYCDALSCLVVSQPSPQASFLPGFGVKM 480 
WD40-rpts                                                                                      

Query      481 LSTANMKSSQYVPMHGKQIRGLAFSSRSKGLLLSASLDSTVKLTSLETNTVVQTYNAGRPVWSCCWCLDESNHIYAGLVN 560 
WD40-rpts                                                      (_________________WD 1__________

Query      561 GSILVYDLRNTSSHIQELVPQKARCPLVSLSYIPRAASAAFPYGGVLAGTLENASFWELKMGFSHWPHVLPMEPGGCVDF 640 
WD40-rpts      ______)                                                                         

Query      641 QTESSTRHCLVTYRPDKNHNTLRSVLMEMSYKLNDAGEPVCSCRPVQTFLGGPTCKLLTKSAIFQNPENDGSILVCTGDE 720 
WD40-rpts                                                                                      

Query      721 ASNSALLWDAGSGSLLQELQADQPVLDICPFEANHSSCLATLTEKMVHIYRWE 773 
WD40-rpts                                                           

1 WD40-repeats found in QUERY=sp_D2HWM5_RFWD3_AILME (Len=773):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   529-567      4.11  284.42  0.00911       15.0%     46.58

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  529-567    NTVVQTYNAGRPVWSCCWCLDESNHIYAGLVNGSILVYD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD