WDRR: WD40 Repeat Recognition
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| JobID: GSQQ51659460615 Submitted: 2022-08-03 01:16:55 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79791118 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh03G009490 (Len=578) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh03G009490, Len=578): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTSITSVELNYLVFRYLQESGFIHSAFALGYEAGINKCPIDGNLVPPGALVTVVQKGLQYLEMEANLSNNDTDLDEDFSF 80
WD40-rpts
Query 81 LQPLDLITKDVHELRQIIKDKKKSLLKDKEKDKELEIERGRVREKERREIEVERGRAREKERLEREKERLERDKEHDRDR 160
WD40-rpts
Query 161 DKIEKDKEREKHHEDFTDKDIVMDQDEKVHANQGENGVFGGPEPMDISTTSTSQSCEISSSDVTILQGHTSEVCACAWNP 240
WD40-rpts (______________________WD 1______________________)(________________WD
Query 241 TGSLLASGSGDSTARIWTIADGSNRSGAQGGPLNVLVLKHVKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNG 320
WD40-rpts 2________________) (________________WD 3_______________) (
Query 321 DLRSTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 400
WD40-rpts _________________WD 4________________) (________________WD 5________________)
Query 401 GETRPIKIFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVYDLREHSKEIYTIRWSPTGPGTNNPNQQLVLA 480
WD40-rpts (_________________WD 6________________) (_____________________WD 7__________
Query 481 SASFDSTVKLWDVELGKLIYSLNGHREPVYSVAFSPNGEYLASGSLDKSMHIWSLKEGKIVRTYTGNGGIFEVCWNKEGD 560
WD40-rpts ___________) (_________________WD 8________________) (________________WD 9__
Query 561 KIAACFANNTVCVLDFRM 578
WD40-rpts ______________)
 9 WD40-repeats found in QUERY=CmaCh03G009490 (Len=578): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 171-220 4.77 311.71 0.00391 12.5% 32.86 WD 2: Seg 5 221-258 9.78 518.70 6.3e-06 37.5% 48.97 WD 3: Seg 11 281-317 8.37 460.37 3.9e-05 25.0% 43.45 WD 4: Seg 14 320-358 10.00 527.90 4.8e-06 37.5% 52.39 WD 5: Seg 18 362-399 6.89 399.30 0.00026 17.5% 51.76 WD 6: Seg 22 403-441 9.74 517.05 6.7e-06 32.5% 56.71 WD 7: Seg 26 445-492 7.95 442.98 6.7e-05 32.5% 58.75 WD 8: Seg 30 496-534 10.47 546.96 2.6e-06 42.5% 55.68 WD 9: Seg 34 538-575 7.79 436.60 8.1e-05 25.0% 55.72Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 171-220 KHHEDFTDKDIVMDQDEKVHANQGENGVFGGPEPM---------DISTTSTSQSCEISS WD 2 221-258 --SDVTILQG----------HTSEVCACAWNPTGS---------LLASGSGDSTARIWT WD 3 281-317 ---VKGRTNE----------KSKDVTTLDWNGDGT---------LLATGSYDGQARIWS WD 4 320-358 -GDLRSTLSK----------HKGPIFSLKWNKKGD---------YLLTGSCDKTAIVWD WD 5 362-399 -EEWKQQFEF----------HSGPTLDVDWRNNVS----------FATSSTDNMIYVCK WD 6 403-441 -TRPIKIFAG----------HQGEVNCVKWDPTGS---------LLASCSDDITAKIWS WD 7 445-492 -DKYVYDLRE----------HSKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWD WD 8 496-534 -GKLIYSLNG----------HREPVYSVAFSPNGE---------YLASGSLDKSMHIWS WD 9 538-575 -GKIVRTYTG----------N-GGIFEVCWNKEGD---------KIAACFANNTVCVLD WD40 Template TGECLRTLSG----------HTSGVTSVSFSPDGK---------RLVSGSEDGTIKVWD |
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