Input parameters:

  Query = CmaCh14G009820 (Len=1113)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G009820, Len=1113):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MACIKGVNRSAFVAIAPDGPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDKDLPVIGDTPSSERFNRLSWGKNGSGSE 80  
WD40-rpts      (_______________WD 1______________)                            (________________

Query       81 QFSLGLIAGGLVDGNIDIWNPLALIRPEAGETPLVGHLSRHKGPVRGLEFNTITPNLLASGADDGEICIWDLANPSQPIH 160 
WD40-rpts      WD 2_______________)           (_________________WD 3_________________)(________

Query      161 FPPLKGSGSAAQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSDSTRRRCSVLQWNPDLATQLVVASDDDN 240 
WD40-rpts      ______________WD 4______________________)   (___________________WD 5____________

Query      241 SPSLRLWDMRNIMTPVKEFVGHTRGVIAMAWCPTDSSYLLTCAKDNRTICWDTISGDIVCELPASTNWNFDVHWFPRIPG 320 
WD40-rpts      _______)    (_________________WD 6_________________)   (_________________WD 7___

Query      321 VITASSFDGKIGIHNIESCSRYGVGENDFSAVSLRAPKSYKRPVGASFGFGGKVVTFQSRAPVAGASAGASEVYVHDLLM 400 
WD40-rpts      ______________)                                           (_____________________

Query      401 EHSLVTRSSEFEAAIQNGERSSLRVLCEQKSKESDLEDDRETWGFLKVMFEDDGTARTKLLSHLGFNVSTESQDSQAVIS 480 
WD40-rpts      _________WD 8______________________________)                                    

Query      481 QDVDALHLNDTAADNIGYGDGREATLFPSDNGEDFFNNLPSPKADTPLSISGDNHAAEVSVAAEEPQDEDVVEDNGDASF 560 
WD40-rpts                                                                                      

Query      561 ADGVQRALVVGDYKGAVGLCVSANKMADALVIAHVGGGSLWENTRDQYLKMSCSPYLKIVSAMVNNNLLSLVNTRPLKFW 640 
WD40-rpts                                                                                      

Query      641 KETLALLCSFAQKDEWTMLCDTLASKLMVAGYTLPATLCYICAGNIDKTVEIWSRSLSTEREGKSYVDLLQDLMEKTIVL 720 
WD40-rpts                                                                                      

Query      721 ALATGQKRFSVTLCKLVEKYAEILASQGQLTTALEYIKLLGSEELTPELVILKDRISFSTESDKNDKASTIEYSQQPSAN 800 
WD40-rpts                                                                                      

Query      801 VYSAEATKHYYQESAPAQFHQNVPTTAYNDNYSQTAYGGRGYTAPTPYQPAPQPNLFLPSQAPQAPETNFTAPPGQPAPR 880 
WD40-rpts                                                                                      

Query      881 PFVPATPPALRNVEKYQQPPTLGSQLYPGIVNPTFQPIQSTASIGSAPSHMESVPGHKMPQVVAPAPPSRGFMPVPNPGA 960 
WD40-rpts                                                                                      

Query      961 VQLPGMGMVQPPSPPQSTPTQPPVTPPAPPPTVQTADTSNVPAHQKPVVATLSRLFNETSEALGGARANPGKKREIEDNS 1040
WD40-rpts                                                                                      

Query     1041 RKMGALFNKLNSGDISKNAADKLGQLCQALDTGDYGRALQIQVLLTTSEWDECSFWLATLKRMIKTRQSMRLS 1113
WD40-rpts                                                                               

8 WD40-repeats found in QUERY=CmaCh14G009820 (Len=1113):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       3.09  242.31  0.03327       15.0%     44.98
  WD 2:  Seg  5    64-100      3.61  263.86  0.01718       30.0%     32.10
  WD 3:  Seg  8   112-151      6.09  366.25  0.00072       32.5%     51.23
  WD 4:  Seg 12   152-201      4.38  295.70  0.00643       25.0%     40.90
  WD 5:  Seg 15   205-248      3.23  247.90  0.02804       25.0%     52.78
  WD 6:  Seg 19   253-292      6.78  394.93  0.00030       27.5%     53.39
  WD 7:  Seg 23   296-335      5.34  335.24  0.00189       22.5%     53.31
  WD 8:  Seg 29   379-444      2.93  235.55  0.04089       10.0%     26.44

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     MAC---------IK-----GVNR-SAFVAIAP-DG-PY-MAAG--------TMAG---AV------------------DLSF
   WD 2   64-100    -SE---------RFNRLSWGKNG-SGSEQFSL-G---L-IAGG--------LVDG---NI------------------DIWN
   WD 3  112-151    -TP---------LVGHLSRHKGP-VRGLEFNTITP-NL-LASG--------ADDG---EI------------------CIWD
   WD 4  152-201    LANPSQPIHFPPLKGSGSAAQGE-ISFLSWNS-KV-QHILAST--------SYNG---TT------------------VVWD
   WD 5  205-248    -QK---------PVISFSDSTRRRCSVLQWNP-DLATQ-LVVA--------SDDDNSPSL------------------RLWD
   WD 6  253-292    -MT---------PVKEFVGHTRG-VIAMAWCPTDS-SY-LLTC--------AKDN---RT------------------ICWD
   WD 7  296-335    -GD---------IVCELPASTNW-NFDVHWFP-RIPGV-ITAS--------SFDG---KI------------------GIHN
   WD 8  379-444    SRA---------PVAGASAGASE-VYVHDLLM-EH-SL-VTRSSEFEAAIQNGER---SSLRVLCEQKSKESDLEDDRETWG

   WD40 Template    TGE---------CLRTLSGHTSG-VTSVSFSP-DG-KR-LVSG--------SEDG---TI------------------KVWD