JobID: GQU141659461437 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh04G025380 (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G025380, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGGGGSNPGPVSCGSWIRRPENVNLALIGRSRRPDSSPSVLEIFSFDPKITSLSASPLTEFVFEECDGDLVSVAVHPSG 80  
WD40-rpts                   (__________________WD 1__________________)  (_________________WD 2_

Query       81 DEIVCSTTQGGCKRAIECRGHNFLAKLSSRLFELCGQELNVKLLMKELPPLNNVGSQNCLAFSVDGSKLATGGVNGHLRI 160 
WD40-rpts      _______________)                             (________________WD 3______________

Query      161 LEWPNLRPILDEPSAHKSVRDMDFSLDSEFLASTSSDGSARVWKTDDGVPITTLTRSADEKIELCRFSKDGTKPFLFCTV 240 
WD40-rpts      _)   (_________________WD 4________________)   (____________________WD 5________

Query      241 QRGEKAVTAVWDISNWKRIGYKRLLRKPACVMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTSIKTLEFCP 320 
WD40-rpts      ___________)   (_________________WD 6________________)(___________________WD 7__

Query      321 SERVVLTGSVEWGALVTKLNVPADWKEWQIYLLLVSLFAASAVVFYIFYENSDSFWQFPLGRDQPARPRFDSFVGDSQYA 400 
WD40-rpts      _________________)(_________________WD 8________________)                       

Query      401 DDPFGPVDMKLVCSSFV 417 
WD40-rpts

8 WD40-repeats found in QUERY=CmaCh04G025380 (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-55       5.14  326.87  0.00245       22.5%     43.77
  WD 2:  Seg  5    58-96       8.15  451.28  5.1e-05       17.5%     56.59
  WD 3:  Seg 11   126-162      8.16  451.91  5.0e-05       17.5%     45.01
  WD 4:  Seg 14   166-204      9.09  490.00  1.5e-05       27.5%     55.70
  WD 5:  Seg 18   208-252      6.58  386.27  0.00039       30.0%     53.26
  WD 6:  Seg 22   256-294      8.79  477.95  2.2e-05       27.5%     58.92
  WD 7:  Seg 26   295-338      7.34  417.79  0.00015       12.5%     56.69
  WD 8:  Seg 30   339-377      6.45  381.01  0.00046        7.5%     37.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-55     CGSW----IRRPE-NVNLALIGRSRRPDSSPSV-----LEIFSFDPKITSLS
   WD 2   58-96     -PLT----EFVFE-ECDGDLVSVAVHPS--GDE-----IVCSTTQGGCKRAI
   WD 3  126-162    ---K----ELPPL-NNVGSQNCLAFSVD--GSK-----LATGGVNGHLRILE
   WD 4  166-204    -LRP----ILDEP-SAHKSVRDMDFSLD--SEF-----LASTSSDGSARVWK
   WD 5  208-252    -GVP----ITTLTRSADEKIELCRFSKD--GTKPFLFCTVQRGEKAVTAVWD
   WD 6  256-294    -WKR----IGYKR-LLRKPACVMSISRD--GKY-----LALGSKDGDVCVAE
   WD 7  295-338    VKKMEVSHMSKRL-HLGTSIKTLEFCPS--ERV-----VLTGSVEWGALVTK
   WD 8  339-377    -LNV----PADWK-EWQIYLLLVSLFAA--SAV-----VFYIFYENSDSFWQ

   WD40 Template    TGEC----LRTLS-GHTSGVTSVSFSPD--GKR-----LVSGSEDGTIKVWD