WDRR: WD40 Repeat Recognition
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| JobID: GIP6K1529560838 Submitted: 2018-06-21 14:00:38 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 209690963 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = atg18 (Len=500) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (atg18, Len=500): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDSSPTINFINFNQTGTCISLGTSKGFKIFNCEPFGKFYSEDSGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINT 80
WD40-rpts (_____________WD 1_____________) (___________________WD 2___________________)
Query 81 KKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLVYPSPPKVINSE 160
WD40-rpts (__________________WD 3_________________) (_____
Query 161 IKAHATTNNITLSVGGNTETSFKRDQQDAGHSDINDLDQYSSFTKRDDADPTSSNGGNSSIIKNGDVIVFNLETLQPTMV 240
WD40-rpts ____________WD 4________________) (_______________WD 5______________) (_____
Query 241 IEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETGDKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKLG 320
WD40-rpts ____________WD 6_________________) (__________________WD 7_________________)(_
Query 321 HSMSNNKLDSDDSNMEEAAADDSSLDTTSIDALSDEENPTRLAREPYVDASRKTMGRMIRYSSQKLSRRAARTLGQIFPI 400
WD40-rpts ________________WD 8_________________)
Query 401 KVTSLLESSRHFASLKLPVETNSHVMTISSIGSPIDIDTSEYPELFETGNSASTESYHEPVMKMVPIRVVSSDGYLYNFV 480
WD40-rpts (_____________________________WD 9____________________________)
Query 481 MDPERGGDCLILSQYSILMD 500
WD40-rpts
 9 WD40-repeats found in QUERY=atg18 (Len=500): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-32 5.06 323.59 0.00271 12.5% 43.95 WD 2: Seg 4 36-79 4.92 317.82 0.00324 10.0% 34.65 WD 3: Seg 11 111-151 3.36 253.51 0.02362 12.5% 23.94 WD 4: Seg 15 155-193 4.87 315.97 0.00343 5.0% 34.78 WD 5: Seg 18 197-231 4.07 282.85 0.00957 10.0% 19.99 WD 6: Seg 21 235-274 7.90 441.16 7.0e-05 25.0% 55.51 WD 7: Seg 25 278-318 7.31 416.64 0.00015 20.0% 57.48 WD 8: Seg 29 319-358 5.85 356.43 0.00098 12.5% 5.80 WD 9: Seg 33 418-480 2.88 233.77 0.04315 15.0% 34.00Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-32 ------------------------------M--SDSSPTINFINFNQTGTCISLG-----T-SKG-FKIFN WD 2 36-79 -FGK-----------------------FYSE--DSGGYAIVEMLFSTSLLALVGIGDQPALSPRR-LRIIN WD 3 111-151 EQIY-----------------------IYDI-NTMRLLHTIETNPNPRGLMAMSP-----SVANS-YLVYP WD 4 155-193 -KVI-----------------------NSEI--KAHATTNNITLSVGGNTETSFK-----RDQQD-AGHSD WD 5 197-231 -LDQ-----------------------YSSF--TKRDDADPTSSNGGNS----SI-----IKNGD-VIVFN WD 6 235-274 -LQP-----------------------TMVI--EAHKGEIAAMAISFDGTLMATA-----SDKGTIIRVFD WD 7 278-318 -GDK-----------------------IYQFRRGTYATRIYSISFSEDSQYLAVT-----GSSKT-VHIFK WD 8 319-358 LGHS-----------------------MSNN--KLDSDDSNMEEAAADDSSLDTT-----SIDAL-SDEEN WD 9 418-480 PVETNSHVMTISSIGSPIDIDTSEYPELFET--GNSASTESYHEPVMKMVPIRVV-----SSDGY-LYNFV WD40 Template TGEC-----------------------LRTL--SGHTSGVTSVSFSPDGKRLVSG-----SEDGT-IKVWD |
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