WDRR: WD40 Repeat Recognition
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| JobID: GHGBO1659498335 Submitted: 2022-08-03 11:45:35 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79752697 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G003030 (Len=1032) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G003030, Len=1032): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSIPRIFLLFSLGFSLFPSFFSLPHPDPLTIRPFQVNQSPPATIPAFPEQSDVQGCPLDLPDELFHGVKTACGPSKGGV 80
WD40-rpts
Query 81 SGELHRSRCCPVLAAWLYAAYSATALQRAGRPGAAAGHTAPSYDLPLLPDDSETCVSNLDQALNQRGIELMKPNETCDVV 160
WD40-rpts (______________
Query 161 YCYCGIRLHPLSCPEAFSVNQNGILEGDRNVKRLERNCLSSGNVNGFPGLGGCSKCLKSLYQLNNKETLNSSKPENRTTK 240
WD40-rpts _WD 1_______________)
Query 241 MHHKECQLMGLTWLLAKNRTGYIHTITSVLRAKMMSKDGSDPKSCTLNSDGMPLAVDSAEISGSSVSTPIQASLNLGLVW 320
WD40-rpts (_____________________WD 2_____________________)
Query 321 AGLLYNMIMLGSEMIFVLCVDWKMPNSFLICPPVKKKRGDSLAFPGNSVRALFHYRYRPLRELHGHSSRCNHLQIDLPFR 400
WD40-rpts (_____________WD
Query 401 HFHHIFFLFFFFFFFFFISLTMATPELSETYACMPSTERGRGILISGHPKTNSVLYTNGRSVMMLNLDNPLEVSVYAEHG 480
WD40-rpts 3_____________) (________________WD 4________________) (__________
Query 481 YPATVARYSPNGEWIASADVSGVMRLWGTHSGFVLKNEYKVLSGRIDDLQWSPDGMRIVACGEGKGKSFVRAFMWDSGSN 560
WD40-rpts _______WD 5________________)(____________________WD 6____________________) (__
Query 561 VGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPFRFKQSLRDHSNFVNCIRFSPDGSKFISVSSDKKGILYDA 640
WD40-rpts _______________WD 7_________________) (_________________WD 8________________)(
Query 641 KTADKIGELSSDDGHKGSIYAVSWSPDGKQVLTVSADKTAKVWGISDEGNGTLEKTLTSHCSGGVDDMLVGCLWQNQHLV 720
WD40-rpts ____________________WD 9___________________) (__________________WD10_______
Query 721 TVSLGGTISLFSASDLDKSPVILFGHMKNVTSLVVLKSDPKVILSTSYDGRIIKWIQGIGYSGKLQRKENSQIKCLAALE 800
WD40-rpts ___________) (_________________WD11_________________) (________________WD12
Query 801 DELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLAAVSPELALVSIDTGVVLLRGSNIVSTINLGFTVTASVLAP 880
WD40-rpts _______________)(___________________WD13__________________)(_________________WD1
Query 881 DGSEVIVGGQDGKLHIYSVADDSLTEEATIEKHRGAISVIRYSPDLTMFASGDLNREAIVWDRATREVKLKNMLFHTARI 960
WD40-rpts 4________________)(___________________WD15___________________)(_________________
Query 961 NCLDWSPDNTKVATGSLDTCVIIYEVDKPASSRLTVKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKLDPQ 1032
WD40-rpts __WD16__________________) (________________WD17________________)
 17 WD40-repeats found in QUERY=CmaCh11G003030 (Len=1032): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 146-181 3.33 252.38 0.02445 20.0% 6.41 WD 2: Seg 2 248-295 4.23 289.59 0.00777 15.0% 9.27 WD 3: Seg 6 384-415 3.43 256.47 0.02157 7.5% 26.03 WD 4: Seg 8 429-466 3.31 251.30 0.02527 7.5% 48.48 WD 5: Seg 12 470-508 8.55 467.72 3.1e-05 20.0% 57.17 WD 6: Seg 16 509-554 6.50 383.15 0.00043 20.0% 56.50 WD 7: Seg 20 558-597 7.58 427.97 0.00011 25.0% 56.77 WD 8: Seg 24 601-639 9.20 494.72 1.3e-05 30.0% 58.41 WD 9: Seg 28 640-684 8.96 484.84 1.8e-05 40.0% 46.55 WD10: Seg 32 691-732 6.95 401.77 0.00024 32.5% 49.98 WD11: Seg 36 737-776 7.40 420.44 0.00013 35.0% 56.01 WD12: Seg 40 780-816 3.99 279.61 0.01057 15.0% 50.97 WD13: Seg 44 817-859 5.54 343.34 0.00147 10.0% 41.74 WD14: Seg 48 860-898 8.23 454.79 4.6e-05 22.5% 55.31 WD15: Seg 52 899-942 8.20 453.28 4.8e-05 25.0% 56.39 WD16: Seg 56 943-985 8.50 465.93 3.3e-05 22.5% 58.59 WD17: Seg 60 991-1028 6.95 401.90 0.00024 30.0% 52.31Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 146-181 RGI----E-----LMKPNETC----D---V--------V-YCYCGI-RLHPLSCP---EAFSVNQ WD 2 248-295 LMG----L-----TWLLAKNRTGYIH---TITSVLRAKM-MSKDGS-DPKSCTLN---SDGMPLA WD 3 384-415 -----------------HGHSSRCNH---L--------Q-IDLPFR-HFHHIFFL---FFFFFFF WD 4 429-466 -ET----Y-----ACMPSTERGRGIL---I--------S-GHPKTN-SVLY-TNG---RSVMMLN WD 5 470-508 -PL----E-----VSVYAEHGYPATV---A--------R-YSPNGE-WIASADVS---GVMRLWG WD 6 509-554 THS-GFVL-----KNEYKVLSGRIDD---L--------Q-WSPDGM-RIVACGEGKGKSFVRAFM WD 7 558-597 -GS----N-----VGEFDGHSRRVLS---C--------A-FKPTRPFRIATCGED---FLVNFYE WD 8 601-639 -FR----F-----KQSLRDHSNFVNC---I--------R-FSPDGS-KFISVSSD---KKGILYD WD 9 640-684 AKT----ADKIGELSSDDGHKGSIYA---V--------S-WSPDGK-QVLTVSAD---KTAKVWG WD10 691-732 -GT----L-----EKTLTSHCSGGVDDMLV--------G-CLWQNQ-HLVTVSLG---GTISLFS WD11 737-776 -DK----S-----PVILFGHMKNVTS---L--------VVLKSDPK-VILSTSYD---GRIIKWI WD12 780-816 -GY----S-----GKLQRKENSQIKC---L--------A-ALEDE---LVTSGFD---NKVWRVS WD13 817-859 IKD-GQCG-----EAEAIDVGSQPKD---L--------T-LAAVSP-ELALVSID---TGVVLLR WD14 860-898 -GS----N-----IVSTINLGFTVTA---S--------V-LAPDGS-EVIVGGQD---GKLHIYS WD15 899-942 VADDSLTE-----EATIEKHRGAISV---I--------R-YSPDLT-MFASGDLN---REAIVWD WD16 943-985 RAT-REVK-----LKNMLFHTARINC---L--------D-WSPDNT-KVATGSLD---TCVIIYE WD17 991-1028 -SS----R-----LTVKGAHLGGVYG---L--------A-FTDDYS--VVSSGED---ACVRVWK WD40 Template TGE----C-----LRTLSGHTSGVTS---V--------S-FSPDGK-RLVSGSED---GTIKVWD |
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