WDRR: WD40 Repeat Recognition
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| JobID: GDQVN1659459803 Submitted: 2022-08-03 01:03:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79788572 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G011960 (Len=917) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G011960, Len=917): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MMNESVNEDDEEECFYETLDRIASSCSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRGR 80
WD40-rpts
Query 81 LLREMGLSGDPSLSRSNTALELDHREKGAADFGRSASSEYLSRQRQLPPVIIRSKSDGSADCNRNTSSSQASGSDADNQC 160
WD40-rpts
Query 161 NYSSSINSPSILSFHLVDEIPTTSFANNRNRLVVKSLSCKSDGASSVAYIASQHKPPSGKNCRWADEIRSDSMVLNTNSD 240
WD40-rpts (_
Query 241 PNRSALSQNGENRREISEDSGCSTSGTVDEKVCTIKDLDNGKEFVVNEISENGMWNKLKEVGTGRQLTMEEFEMCVGHSP 320
WD40-rpts ________________WD 1________________) (___________________
Query 321 IVQELMRRQNVEDGCNGCNENVDLNVNGDIGSGSKLKKKGGWLKSIKNVASTVKGQKERRSSDERDTSSEKGGRRSSSAT 400
WD40-rpts __WD 2____________________) (_________________WD 3________________)(________
Query 401 DDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGELLME 480
WD40-rpts ________WD 4_______________)(_________________WD 5________________) (__
Query 481 KPEEGNLSFLLTANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLENVIVPETVFGLSEKPVCSFEGHLDVVLDLSWS 560
WD40-rpts ______________WD 6________________) (________________WD
Query 561 KSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAAC 640
WD40-rpts 7________________) (_________________WD 8_________________) (________________
Query 641 YTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFSPGSSSEVLITSADSRVRVVDGVDLVYR 720
WD40-rpts WD 9________________) (_________________WD10_________________) (___
Query 721 FKGFRNTNSQISACLSSNGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGLGDTWELQDN 800
WD40-rpts ______________WD11________________) (________________WD12________________)(___
Query 801 YRGDDNTIENHLDEISSANHPPTPVEVANGSEDSLSASGCTNSPLHGTLSSATNSYFFDRISATWPAEKLIVNTQNNRSP 880
WD40-rpts ________________WD13___________________) (__________________WD14_______________
Query 881 HSSEMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI 917
WD40-rpts ___)
 14 WD40-repeats found in QUERY=CmaCh01G011960 (Len=917): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 239-277 6.65 389.47 0.00035 7.5% 37.84 WD 2: Seg 9 301-347 5.79 353.74 0.00106 15.0% 28.19 WD 3: Seg 12 353-391 6.42 379.97 0.00047 15.0% 37.36 WD 4: Seg 15 392-428 6.27 373.68 0.00057 20.0% 36.89 WD 5: Seg 18 429-467 9.05 488.60 1.6e-05 32.5% 49.95 WD 6: Seg 23 478-515 5.94 360.11 0.00087 17.5% 25.76 WD 7: Seg 26 541-578 6.76 393.98 0.00030 27.5% 54.03 WD 8: Seg 30 581-620 7.58 427.66 0.00011 27.5% 54.63 WD 9: Seg 34 624-661 7.17 411.04 0.00018 25.0% 56.66 WD10: Seg 39 674-713 6.65 389.20 0.00035 20.0% 48.43 WD11: Seg 42 717-755 8.12 450.19 5.3e-05 22.5% 58.40 WD12: Seg 46 759-796 5.02 321.94 0.00285 15.0% 48.76 WD13: Seg 50 797-840 7.60 428.54 0.00010 22.5% 44.83 WD14: Seg 52 843-884 4.26 290.76 0.00749 20.0% 15.15Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 239-277 -S-------DPNR----SALSQNGENRREISE---D-SGCSTSGTVDEKVCTIKD WD 2 301-347 VGTGRQLTMEEFE----MCVGHSPIVQELMRR---Q-NVEDGCNGCNENVDLNVN WD 3 353-391 -G-------SKLK----KKGGWLKSIKNVAST---V-KGQKERRSSDERDTSSEK WD 4 392-428 GG----------R----RSSSATDDSQDVSFH---G-PERVRVRQYGKSSKELSA WD 5 429-467 -L-------YKSQ----EIQAHSGSIWTIKFS---L-DGKYLASAGEDRIIHVWQ WD 6 478-515 LM-------E--K----PEEGNLSFLLTANES---P-EPTSLSPNVDSHHEKKRR WD 7 541-578 -E-------KPVC----SFEGHLDVVLDLSWS---K-SQ-HLLSSSMDKTVRLWH WD 8 581-620 -S-------KSCL----KIFSHSDYVTCIQFN---PIDDRYFISGSLDAKVRIWS WD 9 624-661 -R-------QVVD----WSDLHEM-VTAACYT---P-DGKGALVGSYKGSCRLYS WD10 674-713 NL-------Q-NK----KKKSSHKKITGFQFS---PGSSSEVLITSADSRVRVVD WD11 717-755 -L-------VYRF----KGFRNTNSQISACLS---S-NGRYVISASEDSHVYIWK WD12 759-796 -D-------SRPS----RSKGVTVVRSYEHFH---C-QDV-SVAIPWPGLGDTWE WD13 797-840 LQ-------DNYRGDDNTIENHLDEISSANHP---P-TPVEVANGSEDSLSASGC WD14 843-884 -S-------PLHG----TLSSATNSYFFDRISATWP-AEKLIVNTQNNRSPHSSE WD40 Template TG-------ECLR----TLSGHTSGVTSVSFS---P-DGKRLVSGSEDGTIKVWD |
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