WDRR: WD40 Repeat Recognition
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| JobID: G9SAW1659505071 Submitted: 2022-08-03 13:37:51 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79746061 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh18G005080 (Len=514) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh18G005080, Len=514): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKNVKKNSSGPPRGAKKGKNFPLSKDPFFSSESRKRRKIVDDEIESGESDEDNGFVNEGAENEEFEEETADEKRKRLAN 80
WD40-rpts
Query 81 EYLEKIREIARRGKEREDEEKDDDDDDDESGDEGGKDSLVAQILQQEQLEDSGRVRREIASRVLKPEARDGFQVLIKHRQ 160
WD40-rpts (________________________WD 1________________________) (___________
Query 161 SVTAVALSDDDLKGFSSSKDGTILHWDVDCGKGEKYQWPSYEVLKSHGVKDPQGRAARHSKVTLSLAVSSDGRYLASGGL 240
WD40-rpts ______WD 2________________) (_________________WD 3_________
Query 241 DRHVHIWDTRTREHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNVEDRAYINTLFGHQSEVLTIDCLRKERLLT 320
WD40-rpts _______) (_________________WD 4________________) (________________WD 5______
Query 321 VGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLTGSDDGSIELWTALKKKPVYIVRNAHPSSLCCTNLEPKENG 400
WD40-rpts __________)(_________________WD 6_________________)(___________________WD 7_____
Query 401 AIPNGCMGNGNANLNTSHNLSAHSWVSSVSVCRNSDLAASGAGNGFVRLWALGSDKKDVRPLYDLPLVGFLNSLTFANSG 480
WD40-rpts _____________)________________WD 8________________)(____________________WD 9____
Query 481 RFVVAGVGQEPRLGRWGRIPASRNGVAVHPLKLS 514
WD40-rpts ________________)
 9 WD40-repeats found in QUERY=CmaCh18G005080 (Len=514): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 92-145 6.15 368.68 0.00067 12.5% 26.29 WD 2: Seg 3 149-187 9.39 502.60 1.0e-05 37.5% 54.63 WD 3: Seg 8 210-248 9.27 497.75 1.2e-05 27.5% 45.06 WD 4: Seg 11 252-290 9.99 527.14 4.9e-06 32.5% 55.83 WD 5: Seg 15 294-331 7.61 428.84 0.00010 25.0% 54.36 WD 6: Seg 19 332-371 7.09 407.51 0.00020 25.0% 50.83 WD 7: Seg 23 372-414 4.32 293.16 0.00695 10.0% 44.75 WD 8: Seg 26 414-451 7.82 437.70 7.8e-05 30.0% 46.41 WD 9: Seg 30 452-497 6.10 366.49 0.00072 17.5% 44.96Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 92-145 RGKEREDEEKDDDDDDD---ESG-DEG-----GKDSLVAQILQQEQLEDSGRV-RREIASRVLK WD 2 149-187 -R--------------D---GFQ-VLI-----KHRQSVTAVALSDDDLKGFSS-SKDGTILHWD WD 3 210-248 -K--------------D---PQG-RAA-----RHSKVTLSLAVSSDGRYLASG-GLDRHVHIWD WD 4 252-290 -R--------------E---HIQ-AFP-----GHRGPVSCLTFRQGTSELFSG-SFDRTVKIWN WD 5 294-331 -R--------------A---YIN-TLF-----GHQSEVLTIDCLRKE-RLLTV-GRDRSMQLWK WD 6 332-371 VP--------------E---ESRLVFR-----APASSLECCCFISNDE-FLTG-SDDGSIELWT WD 7 372-414 AL--------------KKKPVYI-VRN-----AHPSSLCCTNLEPKENGAIPN-GCMGNGNANL WD 8 414-451 -L--------------N---TSH-NLS-----AH-SWVSSVSVCRNSDLAASG-AGNGFVRLWA WD 9 452-497 LG--------------S---DKK-DVRPLYDLPLVGFLNSLTFANSGRFVVAGVGQEPRLGRWG WD40 Template TG--------------E---CLR-TLS-----GHTSGVTSVSFSPDGKRLVSG-SEDGTIKVWD |
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