JobID: G9EKI1620386011 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = 2 (Len=699)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2, Len=699):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATAVIAAATAGSQSAESIRSTSSGTTTSSAKKKVLRSLNFMKDADHRNLRAFTVVGLSRTIVAVCQKLGAEAIVTDSAV 80  
WD40-rpts                                                                                      

Query       81 VSGINRFLKRCSDVYAELEVSNFQWDLASELVSELCVPLRTLLGKELFNRSFPIVANSSVLQLLLLPISSTAGVDATSIG 160 
WD40-rpts                                                                                      

Query      161 GLGNRVASTDRNLSALDDRLARSQIQLRRRPLVEEEGDGEGDADDEIDDGDNVSVASKPEPEDPTTYPPELLRFAYHAVR 240 
WD40-rpts                                                                                      

Query      241 LHSVRATSFLRVPSALLMGTGKKAAQWEAALSKELLLLQEARRQRKVVSAALAPERAGADAIWLRPRVRQPFEARREEGV 320 
WD40-rpts                                                                      (_______________

Query      321 PQAPTGGYEGGGGGILGTSWALSAEIRQSIKAHSSSVRCVSVDGDEELLLTGSRHGSCRVWRLAGHPVQARASAPTELAD 400 
WD40-rpts      _WD 1_______________)  (_________________WD 2________________)           (______

Query      401 NRPILSVARTGRAGPLTRGGRSGAGETDGMAAAASASGVMLWDLRTSQMRMRLPFSATSEPVVSMTTSTSVVDVAVATAR 480 
WD40-rpts      ________________WD 3______________________)   (__________________WD 4___________

Query      481 RVVCLDVRTGPRVVAEWHADAAGIGSSSIAAGLNLTTVASFVDGVAYIALGTASGRVVLLDSRTGRQAARWQALEAGARV 560 
WD40-rpts      ______)          (___________________WD 5___________________)      (____________

Query      561 VHLMQISASQLLVVGADKEARVWRVMLRSHGHPQLRMTITGVPEGICSSQISVHSAADTAVFYVANSSRIHCVQLPTEPR 640 
WD40-rpts      ____WD 6_______________)                                  (________________WD 7_

Query      641 AVVSVQSAVAVRMESWQLTEPGGASKNNKSRVVAHGMAVLPLRQLVLLGAEDGCLKCVV 699 
WD40-rpts      ______________)     (_________________WD 8________________)

8 WD40-repeats found in QUERY=2 (Len=699):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   305-341      4.00  279.73  0.01053       12.5%     10.95
  WD 2:  Seg 14   344-382      9.78  518.47  6.4e-06       32.5%     51.22
  WD 3:  Seg 19   394-443      4.30  292.49  0.00710       17.5%     32.80
  WD 4:  Seg 22   447-487      6.43  380.09  0.00047       12.5%     53.38
  WD 5:  Seg 27   498-541      5.77  352.98  0.00109       17.5%     45.71
  WD 6:  Seg 31   548-584      6.19  370.53  0.00063       17.5%     51.66
  WD 7:  Seg 37   619-655      6.42  379.81  0.00047       12.5%     42.60
  WD 8:  Seg 40   661-699      6.08  365.65  0.00073       15.0%     23.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  305-341    RPR---VRQ--------PF--EARR--EEGVPQAPTG-G---YEGGGGGILGTSWA
   WD 2  344-382    -AE---IRQ--------SI--KAHSSSVRCVSVDGDE-E--LLLTGSRHGSCRVWR
   WD 3  394-443    APT---ELADNRPILSVAR--TGRAGPLTRGGRSGAG-ETDGMAAAASASGVMLWD
   WD 4  447-487    -SQ---MRM--------RLPFSATSEPVVSMTTSTSV-V--DVAVATARRVVCLDV
   WD 5  498-541    HADAAGIGS--------SS--IAAGLNLTTVASFVDGVA--YIALGTASGRVVLLD
   WD 6  548-584    -AA---RWQ--------AL--EAGARVVHLMQISAS-----QLLVVGADKEARVWR
   WD 7  619-655    TAV---F-----------Y--VANSSRIHCVQLPTEP-R--AVVSVQSAVAVRMES
   WD 8  661-699    -PG---GAS--------KN--NKSRVVAHGMAVLPLR-Q--LVLLGAEDGCLKCVV

   WD40 Template    TGE---CLR--------TL--SGHTSGVTSVSFSPDG-K--RLVSGSEDGTIKVWD