Input parameters:

  Query = CsaV3_1G037130 (Len=871)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G037130, Len=871):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATSFKNNYRCVPFLQQFYEGGAFVVSSDASFIACACGDSIKIVDSETAAIRSTVEGGESEVFTALALSPNDKLLFSAGH 80  
WD40-rpts      (____________________WD 1___________________)   (_________________WD 2__________

Query       81 SRQIRVWDLSTLKCVRSWKGHDGPVMGMACHLSGGLLATAGADRKVLVWDVDGGFCTHYFTGHKGVVSSILFHPDPNKQL 160 
WD40-rpts      _______)   (_________________WD 3________________)   (__________________WD 4____

Query      161 LFSGSEDGNVRAWDLMSKKCVATLGHESTVTSIDISEDGWTLLTAGRDKVVHVWNLHNYTCKKTVLTYEVLEAVLVIHSS 240 
WD40-rpts      _____________)   (________________WD 5________________)                      (__

Query      241 SDFASCVGSFSKKREETSASSEIYFITVGERGVVRLWSSESAVCLFEQKSSDVSTKMDEGNRGFTAAVLLPSNRGLLCVT 320 
WD40-rpts      ________________WD 6_________________)            (_________________WD 7________

Query      321 ADQQFIFYSPVKTLKDEMSLIISRRLIGYNEEIVDMKFLGDDEQFLAVATNVEHIRVYDIASMSCSYILAGHTEIVLCLD 400 
WD40-rpts      ________)          (_________________WD 8_________________)   (_________________

Query      401 SCVSSSGCTLIVTGSKDNNVRLWDVESKTCIGVGVGHMGAVGAVAFSKKRRDFFVSGSSDRTLKVWSFDGLAEDESRPVN 480 
WD40-rpts      _WD 9__________________)   (_________________WD10_________________)             

Query      481 LKAKAIVAAHDKDINSIAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLRGHKRGIWSVEFSPVDQCVVTASGDKTIKIW 560 
WD40-rpts      (_________________WD11________________)   (_________________WD12________________

Query      561 AISDGSCLKTFEGHMSSVLRASFLTRGTQLVSCGADGSVMLFTVKTEERIAVYDQHEDKVWALAVGKKTEMLATGGSDGA 640 
WD40-rpts      )   (_________________WD13________________)   (_________________WD14____________

Query      641 VNLWYDSTALDKEEALRKEEEGVLKGQELENAVSDADYTKAIQIAFELRRPHRLYVLFSELCSKNDSENHVGKSLSALGK 720 
WD40-rpts      ____)                                                                           

Query      721 EEFRLLFEYLREWNTKPKLCHVAQFVLFRAFSILPPTEISEVKGIGELLEGLIPYSQRHFSRIDRLVRSSFLLDYTLTGM 800 
WD40-rpts                                                                                      

Query      801 SVIQPENDANDKPPVDIVMKTKTTDIKLLDEHREPENNTLSKKRKSRSKTSSKKKAKGVAYTEVAAVPLAS 871 
WD40-rpts                                                                             

14 WD40-repeats found in QUERY=CsaV3_1G037130 (Len=871):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-45       3.28  250.25  0.02610       15.0%     44.49
  WD 2:  Seg  5    49-88       6.50  383.26  0.00043       32.5%     59.18
  WD 3:  Seg  9    92-130      8.45  463.91  3.5e-05       27.5%     57.42
  WD 4:  Seg 13   134-174      8.37  460.48  3.9e-05       45.0%     57.13
  WD 5:  Seg 17   178-215      7.95  443.11  6.6e-05       40.0%     58.56
  WD 6:  Seg 23   238-278      4.29  291.90  0.00723       12.5%     37.96
  WD 7:  Seg 27   291-329      6.29  374.47  0.00056       12.5%     50.87
  WD 8:  Seg 31   340-379      5.52  342.83  0.00149       22.5%     53.74
  WD 9:  Seg 35   383-424      7.60  428.42  0.00010       32.5%     56.84
  WD10:  Seg 39   428-467      8.06  447.53  5.8e-05       40.0%     57.20
  WD11:  Seg 43   481-519      7.82  437.53  7.9e-05       25.0%     55.89
  WD12:  Seg 47   523-561      9.33  499.98  1.1e-05       40.0%     57.45
  WD13:  Seg 51   565-603      9.36  501.17  1.1e-05       40.0%     56.46
  WD14:  Seg 55   607-645      8.20  453.25  4.8e-05       20.0%     56.69

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-45     MATS-FKNNYRCVPFLQQFYE-GGAFV---V-SSD--AS-FIACACGD-SIKIVD
   WD 2   49-88     -AAI-RST------VEGGESEVFTALA---L-SPN--DK-LLFSAGHSRQIRVWD
   WD 3   92-130    -LKC-VRS------WKGHDGP-VMGMA---C-HLS--GG-LLATAGADRKVLVWD
   WD 4  134-174    -GFC-THY------FTGHKGV-VSSIL---F-HPDPNKQ-LLFSGSEDGNVRAWD
   WD 5  178-215    -KKC-VAT------L-GHEST-VTSID---I-SED--GW-TLLTAGRDKVVHVWN
   WD 6  238-278    HSSSDFAS------CVGSFSK-KREET---S-ASS--EI-YFITVGERGVVRLWS
   WD 7  291-329    -SDV-STK------MDEGNRG-FTAAV---L-LPS--NR-GLLCVTADQQFIFYS
   WD 8  340-379    -LII-SRR------LIGYNEE-IVDMK---FLGDD--EQ-FLAVATNVEHIRVYD
   WD 9  383-424    -MSC-SYI------LAGHTEI-VLCLDSCVS-SSG--CT-LIVTGSKDNNVRLWD
   WD10  428-467    -KTC-IGV------GVGHMGA-VGAVA---F-SKK--RRDFFVSGSSDRTLKVWS
   WD11  481-519    -LKA-KAI------VAAHDKD-INSIA---V-APN--DS-LVCSGSQDRTACVWR
   WD12  523-561    -LVS-VVV------LRGHKRG-IWSVE---F-SPV--DQ-CVVTASGDKTIKIWA
   WD13  565-603    -GSC-LKT------FEGHMSS-VLRAS---F-LTR--GT-QLVSCGADGSVMLFT
   WD14  607-645    -EER-IAV------YDQHEDK-VWALA---V-GKK--TE-MLATGGSDGAVNLWY

   WD40 Template    TGEC-LRT------LSGHTSG-VTSVS---F-SPD--GK-RLVSGSEDGTIKVWD