Input parameters:

  Query = CsaV3_1G004120 (Len=301)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G004120, Len=301):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIIMWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALS 80  
WD40-rpts      (___________________WD 1___________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLATGNTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPN 160 
WD40-rpts      __________)   (_________________WD 3________________)     (__________________WD 

Query      161 TLQPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKLPITLFY 301 
WD40-rpts      _WD 6_______________)                                        

6 WD40-repeats found in QUERY=CsaV3_1G004120 (Len=301):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       7.89  440.54  7.2e-05       30.0%     55.36
  WD 2:  Seg  5    53-91      10.02  528.71  4.7e-06       42.5%     53.43
  WD 3:  Seg  9    95-133     10.66  555.14  2.0e-06       45.0%     56.87
  WD 4:  Seg 13   139-179      8.54  467.43  3.1e-05       35.0%     53.83
  WD 5:  Seg 17   183-221     10.40  544.17  2.9e-06       42.5%     55.60
  WD 6:  Seg 21   225-261      6.33  376.11  0.00053       30.0%     51.36

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MAEGLVLRGTMRAHTDMVTAIATPIDN-SDMIVTSSRDKSIIMWR
   WD 2   53-91     -GV---PQRRLNGHSHFVQDVVLSSDG--QFALSGSWDGELRLWD
   WD 3   95-133    -GN---TSRRFVGHSKDVLSVAFSIDN--RQIVSASRDRTIKLWN
   WD 4  139-179    -KY---TIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWN
   WD 5  183-221    -CK---LRVTLAGHAGYVNTVAVSPDG--SLCASGGKDGVILLWD
   WD 6  225-261    -GK---RLYSLDAG-SIIHALCFSPNR--YWLCAAT-ESSIKIWD

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDG--KRLVSGSEDGTIKVWD