WDRR: WD40 Repeat Recognition
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| JobID: G7YSM1329812656 Submitted: 2012-02-21 16:24:16 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 409438308 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = 3SFZ_A_PDBID_CHAIN_SEQUENCE (Len=1249) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (3SFZ_A_PDBID_CHAIN_SEQUENCE, Len=1249): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDAKARNCLLQHREALEKDIKTSYIMDHMISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYISFYNALLHEGY 80
WD40-rpts
Query 81 KDLAALLQSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGK 160
WD40-rpts
Query 161 SVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLL 240
WD40-rpts
Query 241 ILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320
WD40-rpts
Query 321 PLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400
WD40-rpts
Query 401 CVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDC 480
WD40-rpts
Query 481 MYWYNFLAYHMASANMHKELCALMFSLDWIKAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPF 560
WD40-rpts
Query 561 PNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQ 640
WD40-rpts (____________________WD 1__________________
Query 641 VFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
WD40-rpts __) (_________________WD 2________________) (__________________WD 3_________
Query 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
WD40-rpts ________) (_________________WD 4________________) (________________
Query 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG 880
WD40-rpts ___WD 5__________________) (_________________WD 6________________) (________
Query 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960
WD40-rpts _________WD 7________________) (_____________WD 8_____________)(_________
Query 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040
WD40-rpts ________WD 9________________) (_________________WD10________________) (______
Query 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
WD40-rpts __________WD11________________) (_________________WD12________________) (___
Query 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYL 1200
WD40-rpts ______________WD13________________) (_________________WD14_____________
Query 1201 KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249
WD40-rpts ___) (_________________WD15________________)
 15 WD40-repeats found in QUERY=3SFZ_A_PDBID_CHAIN_SEQUENCE (Len=1249): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 598-643 7.64 430.33 9.9e-05 30.0% 54.89 WD 2: Seg 16 647-685 9.31 499.28 1.2e-05 32.5% 58.72 WD 3: Seg 20 689-729 7.93 442.41 6.8e-05 30.0% 55.97 WD 4: Seg 24 733-771 10.33 541.24 3.2e-06 47.5% 58.49 WD 5: Seg 29 784-826 5.89 357.77 0.00094 15.0% 38.54 WD 6: Seg 32 830-868 8.20 453.56 4.8e-05 22.5% 57.51 WD 7: Seg 36 872-910 9.64 512.93 7.6e-06 40.0% 57.03 WD 8: Seg 40 919-950 3.93 277.17 0.01140 5.0% 39.39 WD 9: Seg 43 951-989 7.70 432.56 9.2e-05 25.0% 48.99 WD10: Seg 46 993-1031 9.60 511.25 8.0e-06 37.5% 58.22 WD11: Seg 50 1034-1071 6.99 403.49 0.00023 35.0% 53.11 WD12: Seg 54 1075-1113 9.03 487.71 1.7e-05 32.5% 58.40 WD13: Seg 58 1117-1155 9.36 501.14 1.1e-05 35.0% 57.78 WD14: Seg 63 1166-1204 6.47 382.05 0.00044 37.5% 40.33 WD15: Seg 66 1208-1246 7.50 424.62 0.00012 17.5% 57.87Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 598-643 INKKTIKNLSRLV---VRPHTDAVYHACFSQDGQR--IASCGADKTLQVFK WD 2 647-685 -GE------KLLD---IKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWD WD 3 689-729 -GK------LVHT---YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD WD 4 733-771 -KE------CRNT---MFGHTNSVNHCRFSPDDEL--LASCSADGTLRLWD WD 5 784-826 KRF------FLSSEDPPEDVEVIVKCCSWSADGDK--IIVAAKNKVLLFDI WD 6 830-868 -GL------LAEI---HTGHHSTIQYCDFSPYDHL--AVIALSQYCVELWN WD 7 872-910 -RL------KVAD---CRGHLSWVHGVMFSPDGSS--FLTASDDQTIRVWE WD 8 919-950 -----------------AIVLKQEIDVVFQENETM--VLAVDNIRGLQLIA WD 9 951-989 -GK------TGQI---DYLPEAQVSCCCLSPHLEY--VAFGDEDGAIKIIE WD10 993-1031 -NR------VFSS---GVGHKKAVRHIQFTADGKT--LISSSEDSVIQVWN WD11 1034-1071 -TG------DYVF---LQAHQETVKDFRLLQDS-R--LLSWSFDGTVKVWN WD12 1075-1113 -GR------IERD---FTCHQGTVLSCAISSDATK--FSSTSADKTAKIWS WD13 1117-1155 -LS------PLHE---LKGHNGCVRCSAFSLDGIL--LATGDDNGEIRIWN WD14 1166-1204 API------SVEE--GTATHGGWVTDVCFSPDSKT--LVSAG--GYLKWWN WD15 1208-1246 -GD------SSQT---FYTNGTNLKKIHVSPDFRT--YVTVDNLGILYILQ WD40 Template TGE------CLRT---LSGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD |
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