WDRR: WD40 Repeat Recognition
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| JobID: G0VPU1659517016 Submitted: 2022-08-03 16:56:56 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79732731 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_4G032080 (Len=584) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_4G032080, Len=584): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGGVEDEEPALKRMKVASTELRGLSNGSSILERVGGSSRELMARPLPSEGDNRKVIGSRGVIRKDEFVRIIANALYSLGY 80
WD40-rpts
Query 81 KKSSALLEEESGIPLHSSTVNIFMQHILDGNWDESINTLRKIGLSNESMVKSASILILEQKYLELLQADRVMEALKTLRT 160
WD40-rpts
Query 161 EIAPLSINNNRIHELSSFIMSPSLGGLIGSPGEEHLRAKSRAKLLEELQKLLPPAIMIPENRLEHLVEQALLLQRDSCVY 240
WD40-rpts (_______________________WD 1______________________)
Query 241 HNASDQEMSLYTDHTCGKNKIPSQTLQVLQAHSDEIWFLQFSHNGKYLASSSSDLSAIIWEVNSNGKVSLKHKLSGHEKP 320
WD40-rpts (_________________WD 2________________)(__________________
Query 321 VSLVSWSPDDSQLLTCGVEEAIRLWDVSSGKCLHVYEKAGARLVSCGWFPDGKSILAGINDKSICMWALDGKELDSWKGQ 400
WD40-rpts __WD 3___________________) (_________________WD 4________________) (________
Query 401 RILKISDLEITDDGKKIITICRENAILLLDREAKIDKWIEEDQIITSFRLSKDNKFLLVNLLNQEIHLWSLVGEPNLVSK 480
WD40-rpts _________WD 5________________)(_________________WD 6_________________) (_____
Query 481 YKGHRRTRFVIRSCFGGLEEAFIASGSEDSQVYIWHRGSGELIESLPGHSGSVNCVSWNPTNPHMLASASDDHTIRIWGL 560
WD40-rpts _____________WD 7__________________) (_________________WD 8_________________)
Query 561 KGLNIKRNNAYSNGVHYCNGGTGT 584
WD40-rpts
 8 WD40-repeats found in QUERY=CsaV3_4G032080 (Len=584): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 161-211 7.33 417.49 0.00015 12.5% 26.98 WD 2: Seg 6 263-301 9.03 487.55 1.7e-05 30.0% 55.04 WD 3: Seg 10 302-346 9.20 494.82 1.3e-05 35.0% 55.51 WD 4: Seg 14 350-388 9.42 503.63 1.0e-05 30.0% 56.21 WD 5: Seg 18 392-430 8.19 453.07 4.9e-05 15.0% 55.94 WD 6: Seg 22 431-470 8.68 473.37 2.6e-05 20.0% 53.59 WD 7: Seg 26 475-516 7.17 410.81 0.00018 22.5% 56.44 WD 8: Seg 30 520-559 9.05 488.65 1.6e-05 40.0% 54.65Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 161-211 EI-----APLSINNNRIHE---LSSFIMSP-SLGGLIGSPGEEHLRAKSRAKLLEELQKL WD 2 263-301 -S-----QTLQVLQAHSDE---IWFLQFSH-NGKYLASSSSDLSAIIWE----------- WD 3 302-346 VNSNGKVSLKHKLSGHEKP---VSLVSWSP-DDSQLLTCGVEEAIRLWD----------- WD 4 350-388 -G-----KCLHVYEKAGAR---LVSCGWFP-DGKSILAGINDKSICMWA----------- WD 5 392-430 -K-----ELDSWKGQRILK---ISDLEITD-DGKKIITICRENAILLLD----------- WD 6 431-470 RE-----AKIDKWIEEDQI---ITSFRLSK-DNKFLLVNLLNQEIHLWS----------- WD 7 475-516 -P-----NLVSKYKGHRRTRFVIRSCFGGL-EEAFIASGSEDSQVYIWH----------- WD 8 520-559 -G-----ELIESLPGHSGS---VNCVSWNPTNPHMLASASDDHTIRIWG----------- WD40 Template TG-----ECLRTLSGHTSG---VTSVSFSP-DGKRLVSGSEDGTIKVWD----------- |
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