JobID: FUR9B1355132401 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = seq-FUR9B1355132401 (Len=506)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (seq-FUR9B1355132401, Len=506):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQFAFETDINSILKLDTPITNAPLARWQRKAKEGNCSLNTSANTSTMSPMKTSNRSHSSSKTPSKTPGKSGQKMQGTPS 80  
WD40-rpts                                                                                      

Query       81 RAGGDRFIPNRSAMQMDVASFLLSKENEPTDTSPTKKEQQKAWAMNLNGFDMEEAKILRLGGRPQNAPEGYQNNLKVLYS 160 
WD40-rpts                                                                   (_______________WD 

Query      161 QKNTPGSSKKTGRYIPSMPDRVLDAPDIRNDYYLNLIDWSSQNALAVALNDSVYLWNYATGDIILLLQMENSEEYISSVS 240 
WD40-rpts      1______________)(__________________WD 2_________________)(___________________WD 

Query      241 WIKEGHFLAVGTSNSEVQLWDVQQQKRLRNMISHSSRVGALSWNNHILSSGSRTGHIHHHDVRVAQHHVSTLTGHTQEVC 320 
WD40-rpts      3___________________)   (________________WD 4_______________)    (______________

Query      321 GLKWSPDGRYLASGANDNLVNVWPCVQGDSGEFSPVQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGTC 400 
WD40-rpts      ___WD 5________________)        (__________________WD 6__________________)   (__

Query      401 LNSVDTHSQVCSILWSANYKELISGHGFAQNQLVLWKYPTMTRVSELKGHTARVLNLAMSPDGCTVASAAADETLRLWKC 480 
WD40-rpts      _______________WD 7_________________)   (_________________WD 8________________) 

Query      481 FEVDPVTKKEKEKSRSSKSIIHQSIR 506 
WD40-rpts

8 WD40-repeats found in QUERY=seq-FUR9B1355132401 (Len=506):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   142-176      3.16  245.03  0.03062       12.5%     10.62
  WD 2:  Seg  4   177-217      3.31  251.37  0.02522        5.0%     42.97
  WD 3:  Seg  8   218-261      7.95  443.10  6.6e-05       22.5%     59.10
  WD 4:  Seg 12   265-301      6.61  387.87  0.00037       32.5%     55.98
  WD 5:  Seg 16   306-344      9.71  515.95  6.9e-06       40.0%     55.09
  WD 6:  Seg 20   353-394      6.35  377.08  0.00052       22.5%     43.40
  WD 7:  Seg 24   398-437      5.71  350.51  0.00118       32.5%     55.42
  WD 8:  Seg 28   441-479      9.57  509.99  8.3e-06       32.5%     58.51

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  142-176    -GR----PQNAPEGYQNNLKVLYSQKN----T---PGSS--KKTGRYIP
   WD 2  177-217    SMP-DRVLDAPDIRNDYYLNLIDWSSQN--AL---AVAL--NDSVYLWN
   WD 3  218-261    YATGDIILLLQMENSEEYISSVSWIKEGHFLA---VGTS--NSEVQLWD
   WD 4  265-301    -QK----RLRNMISHSSRVGALSW--NNHILS---SGSR--TGHIHHHD
   WD 5  306-344    -QH----HVSTLTGHTQEVCGLKWSPDGRYLA---SGAN--DNLVNVWP
   WD 6  353-394    -FS----PVQTFTQHQGAVKAVAWCPWQSNVLATGGGTS--DRHIRIWN
   WD 7  398-437    -GT----CLNSVDTH-SQVCSILWSANYKELI---SGHGFAQNQLVLWK
   WD 8  441-479    -MT----RVSELKGHTARVLNLAMSPDGCTVA---SAAA--DETLRLWK

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLV---SGSE--DGTIKVWD