WDRR: WD40 Repeat Recognition
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| JobID: FSJCI1659504121 Submitted: 2022-08-03 13:22:01 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79746834 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh16G004250 (Len=440) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh16G004250, Len=440): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITASGSIHIYNWWNSSAFQSI 80
WD40-rpts (___________________WD 1__________________)(_________
Query 81 TVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQA 160
WD40-rpts _________WD 2_________________) (_________________WD 3________________)
Query 161 KPQENATKHILHQFSAHNDSVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
WD40-rpts (__________________WD 4_________________) (________________WD 5________
Query 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSIVIINEGNNLISAAE 320
WD40-rpts ________)________________WD 6________________) (_________________WD 7_________
Query 321 DGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAG 400
WD40-rpts _______) (___________________WD 8___________________)(________________WD 9____
Query 401 GSDVRRAIELLESAIAMYEKMLELILKEAKAGYNQKEIQR 440
WD40-rpts ___________)
 9 WD40-repeats found in QUERY=CmaCh16G004250 (Len=440): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 28-70 6.69 391.21 0.00033 17.5% 47.26 WD 2: Seg 8 71-111 7.13 409.01 0.00019 22.5% 53.58 WD 3: Seg 12 115-153 10.08 530.84 4.4e-06 40.0% 54.97 WD 4: Seg 16 168-208 7.62 429.43 0.00010 32.5% 56.28 WD 5: Seg 20 212-249 7.02 404.52 0.00022 20.0% 57.63 WD 6: Seg 23 248-286 6.01 362.72 0.00080 10.0% 29.94 WD 7: Seg 27 290-328 9.65 513.29 7.5e-06 32.5% 54.74 WD 8: Seg 31 332-375 7.26 414.48 0.00016 15.0% 54.21 WD 9: Seg 35 376-412 5.62 346.82 0.00132 15.0% 32.71Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 28-70 -GTPLASFN-DSHSPRRGI--TRAGRSS-----IAVSHICPITASG-SIHIYN WD 2 71-111 WWNSSAFQSITVPEPVAPL--TATPDGF-----YLFA----GGLSG-CIHTLS WD 3 115-153 -GDVLNSLP-AHRKSVSCL--ELSADGS-----LLIS----GGDDG-TIVVIP WD 4 168-208 -KHILHQFS-AHNDSVTSIYSVMGMSSS-----QIVS----SSMDG-RCKFWS WD 5 212-249 -GTVLHTV--VFPCAIFSV--VLDPSET-----EFFA----AGSDG-LVYKGS WD 6 248-286 -GSLRHNIK-HLISTDSEL--TPPASDN-----LAYR----CSLRH-KNKHLM WD 7 290-328 -SELISWSP-KHDAAVVSI--VIINEGN-----NLIS----AAEDG-NIWVWQ WD 8 332-375 -GQVIMTLE-NEMGSISDL--VIATEKRHEKERNVRR----GSHGR-AMKSES WD 9 376-412 ----SRLPS-PMLGLLINQ--TAEMQGA-----VAAG----GSDVRRAIELLE WD40 Template TGECLRTLS-GHTSGVTSV--SFSPDGK-----RLVS----GSEDG-TIKVWD |
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