Input parameters:

  Query = CsaV3_1G004220 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G004220, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATPELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGYPATVARYSPNGEWIASADVS 80  
WD40-rpts            (_________________WD 1________________)   (_________________WD 2__________

Query       81 GTVRIWGTHIGFVLKKEFKVLSGRIDDLQWSPDGMRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRP 160 
WD40-rpts      ______)(____________________WD 3____________________)   (_________________WD 4__

Query      161 FRIATCGEDFLVNFYEGPPFRFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHKGSIYA 240 
WD40-rpts      _______________)   (_________________WD 5________________)(____________________W

Query      241 VSWSSDGKRVLTVSADKTAKVWEISDDGNGKLEKTLTSPGTGGVDDMLVGCLWQNQHIVTVSLGGTISLFSASDLDKSPV 320 
WD40-rpts      D 6___________________)      (__________________WD 7__________________)    (____

Query      321 ILSGHMKNVTSLVVLKSDPKVILSTSYDGVIIKWIQGIGYSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQ 400 
WD40-rpts      _____________WD 8_________________)(_________________WD 9_________________)(____

Query      401 CGEAEAIDVGSQPKDLTLAAVSPELALVSIDSGVVLLRGSSIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSING 480 
WD40-rpts      _______________WD10__________________)(_________________WD11________________)(__

Query      481 DSLTEEVTLEKHRGAISVIRYSPDLSMFASGDLNREAVVWDRASREVKLKNMLYHTARINCLAWSPDNTKVATGSLDTCV 560 
WD40-rpts      _________________WD12___________________)(___________________WD13_______________

Query      561 IIYEIDKPASNRLTVKGAHLGGVYGLAFTDDFSVVSSGEDACVRVWKLVPQ 611 
WD40-rpts      ___)     (________________WD14________________)    

14 WD40-repeats found in QUERY=CsaV3_1G004220 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       3.80  271.62  0.01353        7.5%     49.30
  WD 2:  Seg  5    49-87       8.76  476.40  2.4e-05       22.5%     56.47
  WD 3:  Seg  9    88-133      6.55  385.07  0.00040       20.0%     57.62
  WD 4:  Seg 13   137-176      7.61  428.96  0.00010       25.0%     55.74
  WD 5:  Seg 17   180-218      8.93  483.66  1.9e-05       27.5%     59.75
  WD 6:  Seg 21   219-263      8.80  478.25  2.2e-05       40.0%     47.35
  WD 7:  Seg 25   270-311      6.36  377.54  0.00051       25.0%     57.03
  WD 8:  Seg 29   316-355      7.49  423.90  0.00012       37.5%     57.22
  WD 9:  Seg 33   356-395      5.41  338.26  0.00172       12.5%     49.88
  WD10:  Seg 37   396-438      5.67  348.86  0.00124       10.0%     41.44
  WD11:  Seg 41   439-477      8.50  465.92  3.3e-05       22.5%     58.01
  WD12:  Seg 45   478-521      8.17  452.34  5.0e-05       27.5%     59.58
  WD13:  Seg 49   522-564      8.54  467.27  3.1e-05       22.5%     59.28
  WD14:  Seg 53   570-607      6.72  392.07  0.00032       27.5%     51.26

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     SE----T---Y-----ACVPSTERGR---GILIS-GHPKTN-SVLYTN-G---RSVMILN
   WD 2   49-87     -P----L---E-----VSVYAEHGYP---ATVAR-YSPNGE-WIASADVS---GTVRIWG
   WD 3   88-133    TH-IGFV---L-----KKEFKVLSGR---IDDLQ-WSPDGM-RIVACGEGKGKSFVRAFM
   WD 4  137-176    -G----T---N-----VGEFDGHSRR---VLSCA-FKPTRPFRIATCGED---FLVNFYE
   WD 5  180-218    -F----R---F-----KLSLRDHSNF---VNCLR-FSPDGS-KFITVSSD---KKGIIYD
   WD 6  219-263    AK----T---GDKMGELSSDDGHKGS---IYAVS-WSSDGK-RVLTVSAD---KTAKVWE
   WD 7  270-311    -G----K---L-----EKTLTSPGTGGVDDMLVG-CLWQNQ-HIVTVSLG---GTISLFS
   WD 8  316-355    -D----K---S-----PVILSGHMKN---VTSLVVLKSDPK-VILSTSYD---GVIIKWI
   WD 9  356-395    QG----I---G-----YSGKLQRREN---SQIKC-FAALED-ELVTSGFD---NKVWRVS
   WD10  396-438    IK----DGQCG-----EAEAIDVGSQ---PKDLT-LAAVSP-ELALVSID---SGVVLLR
   WD11  439-477    -G----S---S-----IVSTINLGFT---VTASV-LAPDGS-EAIIGGQD---GKLHIYS
   WD12  478-521    INGDSLT---E-----EVTLEKHRGA---ISVIR-YSPDLS-MFASGDLN---REAVVWD
   WD13  522-564    RA----SREVK-----LKNMLYHTAR---INCLA-WSPDNT-KVATGSLD---TCVIIYE
   WD14  570-607    -S----N---R-----LTVKGAHLGG---VYGLA-FTDDFS-VVSSGE-D---ACVRVWK

   WD40 Template    TG----E---C-----LRTLSGHTSG---VTSVS-FSPDGK-RLVSGSED---GTIKVWD