Input parameters:

  Query = CsaV3_3G023730 (Len=301)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G023730, Len=301):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPGQKIETGHQDTIHDVAMDYYGKRVASASSDQTIKITGVSNSATQHLATLTGHQGPVWQVAWAHPKFGPLLASCSYDGR 80  
WD40-rpts         (_______________WD 1_______________)(____________________WD 2________________

Query       81 VIIWKEGNQNEWSQAHIFDDHKSSVNSIAWAPHEVGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 160 
WD40-rpts      ____)(_____________________WD 3____________________)      (_____________________

Query      161 TTPGALVGSALLDPVQKLCSGGCDNTVKVWKLYNGVWKMDCFPALQMHSDWVRDVSWAPNLGLPKSTIASASQDGKVVIW 240 
WD40-rpts      ___WD 4_______________________)       (___________________WD 5__________________

Query      241 TVVKEGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVSLWKEAVDGDWQQVSTVEP 301 
WD40-rpts      )      (_________________WD 6________________)               

6 WD40-repeats found in QUERY=CsaV3_3G023730 (Len=301):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-39       8.70  474.04  2.5e-05       30.0%     49.50
  WD 2:  Seg  4    40-85       8.07  447.91  5.7e-05       35.0%     57.26
  WD 3:  Seg  8    86-132      7.97  443.97  6.5e-05       35.0%     57.15
  WD 4:  Seg 12   139-191      7.45  422.38  0.00013       42.5%     51.63
  WD 5:  Seg 16   199-241      8.00  445.24  6.2e-05       30.0%     50.37
  WD 6:  Seg 20   248-286      8.10  449.37  5.5e-05       20.0%     53.29

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-39     ---------QKIETGHQDTIHDVAMDYY--------------GKRVASASSDQTIKITG
   WD 2   40-85     VS-NSATQHLATLTGHQGPVWQVAWAHP------------KFGPLLASCSYDGRVIIWK
   WD 3   86-132    EGNQNEWSQAHIFDDHKSSVNSIAWAPH------------EVGLCLACGSSDGNISVFT
   WD 4  139-191    -W-----DTSRIDQAHPVGVTSVSWAPSTTPGALVGSALLDPVQKLCSGGCDNTVKVWK
   WD 5  199-241    -M-----DCFPALQMHSDWVRDVSWAPN----------LGLPKSTIASASQDGKVVIWT
   WD 6  248-286    -Q-----WEGKVLKDFKTPVWRVSWSLT--------------GNILAVADGNNNVSLWK

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSPD--------------GKRLVSGSEDGTIKVWD