Input parameters:

  Query = CmaCh13G005880 (Len=378)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh13G005880, Len=378):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEAPPRRLRGHKGTATCCIASNDRPGLVATSGEDGCVCWFDMRCKDVVSIMEVGKEPITSICFKQGNEDVIYISSGKEI 80  
WD40-rpts       (__________________WD 1_________________)   (_________________WD 2_____________

Query       81 KSFDVHQATSSKPLESYSYNKEEINQVSCSPKSSFLAAADDGGDVKIIDIHQNCLYKTLRSGHTSVSFLICSSVQFLPWR 160 
WD40-rpts      ___)      (_________________WD 3________________)   (____________________WD 4___

Query      161 PWEVITGGLDSKLIMWDFSRGRPIKVLDFDFPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDGVVHVID 240 
WD40-rpts      ________________)                       (_________________WD 5_________________)

Query      241 IESEKSKISTKTSKRTQTRSKGVTAACDVDNQEQSGRKRLYLDYTVGGHSAAVSCVAFSRFGEKGKFIVSGGNDKCVKLW 320 
WD40-rpts      _______________WD 6________________)   (__________________WD 7__________________

Query      321 NWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLCTTPSDTENLVVCDTSKVVKVYNVA 378 
WD40-rpts      )               (_________________WD 8_________________)  

8 WD40-repeats found in QUERY=CmaCh13G005880 (Len=378):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-42       8.43  462.68  3.6e-05       32.5%     50.03
  WD 2:  Seg  5    46-84       8.75  475.98  2.4e-05       17.5%     57.96
  WD 3:  Seg  9    91-129      8.96  484.59  1.8e-05       25.0%     52.33
  WD 4:  Seg 13   133-177      6.00  362.48  0.00081       37.5%     54.12
  WD 5:  Seg 18   201-240      6.21  371.35  0.00062       27.5%     41.44
  WD 6:  Seg 21   238-276      5.01  321.54  0.00289       10.0%      1.00
  WD 7:  Seg 24   280-321      8.72  475.01  2.5e-05       37.5%     53.20
  WD 8:  Seg 28   337-376      6.56  385.82  0.00039       20.0%     54.77

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-42     TEAPPRRL-RGHKGTA----TCCIAS---N-DRPGLVATSGEDGCVCWFD
   WD 2   46-84     -KDVVSIM-EVGKEPI----TSICFK---Q-GNEDV-IYISSGKEIKSFD
   WD 3   91-129    -SKPLESY-SYNKEEI----NQVSCS---P-KSSFL-AAADDGGDVKIID
   WD 4  133-177    -NCLYKTLRSGHTSVSFLICSSVQFL---PWRPWEV-ITGGLDSKLIMWD
   WD 5  201-240    -GQCFNPA-FIHAIVV----PEVNMV---DRLGQIC-VVARGDGVVHVID
   WD 6  238-276    -VIDIESE-KSKISTK----TSKRTQ---T-RSKGV-TAACDVDNQEQSG
   WD 7  280-321    -LYLDYTV-GGHSAAV----SCVAFSRFGE-KGKFI-VSGGNDKCVKLWN
   WD 8  337-376    -NKILHLN-IDLNKKV----NWLCTT---PSDTENL-VVCDTSKVVKVYN

   WD40 Template    TGECLRTL-SGHTSGV----TSVSFS---P-DGKRL-VSGSEDGTIKVWD